Locus 3520

Sequence ID 3L_DroMel_CAF1
Location 10,323,821 – 10,323,924
Length 103
Max. P 0.874818
window5496

overview

Window 6

Location 10,323,821 – 10,323,924
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 82.85
Mean single sequence MFE -9.68
Consensus MFE -7.63
Energy contribution -6.97
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -2.10
Structure conservation index 0.79
SVM decision value 0.89
SVM RNA-class probability 0.874818
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10323821 103 + 23771897
AAGUCAACAGCAUUUGCAACAACACUGCAAUAACAAUGUAUCUACGACCCCAACAUGUAUUAACGACACAUAAUACAACAACAACAAAAAAAAAUGUAAAACU
.........(((((((((.......)))...........................(((((((........)))))))..............))))))...... (  -9.90)
>DroSec_CAF1 198187 103 + 1
CAGUCGAUAGCAUUUGCAACAACACUCCAAUAACAAUGUUUCUACGACCCCAACAUGUAUUAACGACACAUAAUACAAAAAAAAAAAAAAAAAAUGUAAAACU
..((((..((((((....................))))))....)))).......(((((((........))))))).......................... (  -9.25)
>DroYak_CAF1 207760 97 + 1
AAGUUAACAACACUUUCAACAACACAACAACGCUAAUGUUUCUACGACCCCAACACGUAUUAACGACACAUAAUACA------AACAAGAAAAGUGUAAAACU
.((((....((((((((........((((.......))))................((((((........)))))).------.....).)))))))..)))) (  -9.90)
>consensus
AAGUCAACAGCAUUUGCAACAACACUACAAUAACAAUGUUUCUACGACCCCAACAUGUAUUAACGACACAUAAUACAA_AA_AAAAAAAAAAAAUGUAAAACU
.........((((((.....................(((....)))..........((((((........))))))...............))))))...... ( -7.63 =  -6.97 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:07 2006