| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,322,774 – 10,322,873 |
| Length | 99 |
| Max. P | 0.946701 |
| Location | 10,322,774 – 10,322,873 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -18.34 |
| Energy contribution | -17.91 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10322774 99 - 23771897 -----------------ACUAUCAUAAAUUAAAGGUGUUGUACUUAUUUAAGCU----GCUUAAGUCUUUGAAGUCCUCCAGAGCUUAAUUUUUACUAGGGCGCGUUGUUCUUAUGGUAA -----------------..((((((((....((.(((((((((((....))).)----))(((((.(((((........))))))))))..........))))).))....)))))))). ( -20.20) >DroSec_CAF1 197136 120 - 1 UACAUAACAUUUGUAGCACUGUCAUAAAUUAAAGGUGUUGUACUUAUUUAAGCUACUGGCUUAAGUCUUUUAAGAUCUUCACAGCUUGAAUUUAACUAGGACGCAAUGUUUUUAUGAUUA ((((.......)))).....((((((((......(((((.((...(((((((((...((((((((...)))))).)).....))))))))).....)).)))))......)))))))).. ( -23.80) >DroSim_CAF1 202675 118 - 1 UACAUAACAUUUGUAGCACUGUCAUAAAUUAAAGGUGUUGUACUUAUUUAAGCUACUGGCUUAAGUCUUUUAAGACAUUCACCGCUUGAUUUGAACUAGAGCACAAUGU--UUAUGAUAA ..(((((((((.((.((.(((...((((((((.((((.(((.(((((((((((.....)))))))).....))))))..))))..))))))))...))).)))))))).--))))).... ( -30.00) >consensus UACAUAACAUUUGUAGCACUGUCAUAAAUUAAAGGUGUUGUACUUAUUUAAGCUACUGGCUUAAGUCUUUUAAGACCUUCACAGCUUGAUUUUAACUAGGGCGCAAUGUU_UUAUGAUAA ...................((((((((.......(((((.((...((((((((.....))))))))...(((((..........))))).......)).))))).......)))))))). (-18.34 = -17.91 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:06 2006