Locus 3517

Sequence ID 3L_DroMel_CAF1
Location 10,314,403 – 10,314,493
Length 90
Max. P 0.573634
window5492

overview

Window 2

Location 10,314,403 – 10,314,493
Length 90
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.64
Mean single sequence MFE -20.46
Consensus MFE -15.32
Energy contribution -15.28
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -2.03
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.573634
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10314403 90 - 23771897
CAGAUUCGAAAAUAAAUGGUAGCCAGAAGUCACAAGGAGUUGUCUCACCAUUUGUGAAUU-------GGCAAG-AAAUUUAUUUGAAUGAGUGCAAAA
...(((((.((((((((....(((((...((((((((((....)))....))))))).))-------)))...-..))))))))...)))))...... ( -21.00)
>DroSec_CAF1 188985 91 - 1
CAGAUUCGAAAAUAAAUGGUAGCCAGAAGUCACAAGGAGUUGUCUCACCAUUUGUGAAUU-------GGCAAAAAAAUUUAUUUGAAUGAGUGCAAAA
...(((((.((((((((....(((((...((((((((((....)))....))))))).))-------)))......))))))))...)))))...... ( -20.40)
>DroSim_CAF1 194439 90 - 1
CAGAUUCGAAAAUAAAUGGUAGCCAGAAGUCACAAGGAGUUGUCUCACCAUUUGUGAAUU-------GGCAAG-AAAUUUAUUUGAAUGAGUGCAAAA
...(((((.((((((((....(((((...((((((((((....)))....))))))).))-------)))...-..))))))))...)))))...... ( -21.00)
>DroEre_CAF1 200551 97 - 1
CAGAUUCGAAAAUAAAUGGUAGCCAGAAGUCACAAGGAGUUAUCUCGCCAUUUGUGAAUUGCUGAAUGGCAAG-AAAUUUAUUUGAAUGAGUGCAAAA
...(((((.((((((((....((((..(((((((((..((......))..))))))....)))...))))...-..))))))))...)))))...... ( -20.20)
>DroYak_CAF1 198233 90 - 1
CAGAAUCGAAAAUAAAUGGUAGCCAGAAGUCACAAGGAGUUGUCUCGCCAUUUGUGAAUU-------GGCAAG-AAAUUUAUUUGAAUGAGUGCAAAA
..(..(((.((((((((....(((((...(((((((..((......))..))))))).))-------)))...-..))))))))...)))...).... ( -19.70)
>consensus
CAGAUUCGAAAAUAAAUGGUAGCCAGAAGUCACAAGGAGUUGUCUCACCAUUUGUGAAUU_______GGCAAG_AAAUUUAUUUGAAUGAGUGCAAAA
...(((((.((((((((....(((.....(((((((..((......))..)))))))..........)))......))))))))...)))))...... (-15.32 = -15.28 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:03 2006