Locus 3516

Sequence ID 3L_DroMel_CAF1
Location 10,311,469 – 10,311,562
Length 93
Max. P 0.759731
window5491

overview

Window 1

Location 10,311,469 – 10,311,562
Length 93
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 86.28
Mean single sequence MFE -25.28
Consensus MFE -18.14
Energy contribution -19.10
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -1.98
Structure conservation index 0.72
SVM decision value 0.50
SVM RNA-class probability 0.759731
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10311469 93 - 23771897
AUUUGGCACUUUGGCCAAAUGCCGCUCUAAUGCUACAAUUGGUCUCCGUUGGUCUACAAUAUAUUCACAAAGGU----GUAUGUGGUCCGGUUUGGA
............((((((.((..((......))..)).))))))((((((((.(((((.((((((......)))----)))))))).))))..)))) ( -24.60)
>DroSec_CAF1 186189 82 - 1
AUUUGGCACUUUGGCCAAAUGCCGCUCUAAUGCUCCAA-----------UGGUCUAC-AUAUAUUCACAAAGGUG---GUAUGUGAUCCGGUUUGGA
(((((((......)))))))...((......))(((((-----------(((..(((-((((...(((....)))---)))))))..)))..))))) ( -23.10)
>DroSim_CAF1 191674 82 - 1
AUUUGGCACUUUGGCCAAAUGCCGCUCUAAUGCUCCAA-----------UGGUCUAC-AUAUAUUCACAAAGGUG---GUAUGUGAUCCGGUUUGGA
(((((((......)))))))...((......))(((((-----------(((..(((-((((...(((....)))---)))))))..)))..))))) ( -23.10)
>DroEre_CAF1 197653 85 - 1
AUUUGGCACUUUGGCCAAAUGCCGCUCUAAUGCUCCGA-----------UGGUCUAC-AUAUACCCAUCAAGGCGUAUGUAUGUGGUCCGGUUUCGA
(((((((......)))))))(((((......)).....-----------.((.((((-((((((((.....)).))..)))))))).)))))..... ( -26.40)
>DroYak_CAF1 195246 81 - 1
AUUUGGCACUUUGGCCAAAUGCCGCUCUAAUGCUCCGA-----------UGGUCUAC-AUAUACACAUGAAGG----UGUAUGUGGUCCGGUUUGGA
(((((((......)))))))...((......))(((((-----------(((.((((-((((((........)----))))))))).)))..))))) ( -29.20)
>consensus
AUUUGGCACUUUGGCCAAAUGCCGCUCUAAUGCUCCAA___________UGGUCUAC_AUAUAUUCACAAAGGUG___GUAUGUGGUCCGGUUUGGA
(((((((......)))))))(((((......)).................((.((((.((((...(((....)))...)))))))).)))))..... (-18.14 = -19.10 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:02 2006