Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,310,714 – 10,310,808 |
Length | 94 |
Max. P | 0.582973 |
Location | 10,310,714 – 10,310,808 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 88.57 |
Mean single sequence MFE | -32.45 |
Consensus MFE | -27.26 |
Energy contribution | -27.82 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.84 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10310714 94 - 23771897 CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC--GCUUCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC .((((((((....))))))))((((..(((((((...((((((...(((((..(...--.....)--..)))))-))))))))))..)))..))))... ( -32.40) >DroSec_CAF1 185453 94 - 1 CGCACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC--GAUCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC .((((((((....))))))))((((..(((((((...((((((...(((((..(...--.....)--..)))))-))))))))))..)))..))))... ( -32.70) >DroSim_CAF1 190937 94 - 1 CGCACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC--GAUCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC .((((((((....))))))))((((..(((((((...((((((...(((((..(...--.....)--..)))))-))))))))))..)))..))))... ( -32.70) >DroEre_CAF1 196905 94 - 1 CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCCCAGUUUU--GCCCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC .((((((((....))))))))((((..(((((((...((((((...(((((......--......--.)).)))-))))))))))..)))..))))... ( -30.72) >DroYak_CAF1 194492 94 - 1 CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUU--GGCCCA--AGGAGGC-UGGCACGUCUUAAGGAUGCCCCUC .((((((((....))))))))((((..(((((((...((((((((((.......)))--)(((..--....)))-))))))))))..)))..))))... ( -32.50) >DroAna_CAF1 194850 97 - 1 CACACAGUUUGUCAAUUGUGUGGGUUGUCCGAGCA-AGUGGCUCA-GCCUCAACUUCUUGGUUUAGUAGUUGGCUUGGCACAUCUGAAGGAUGCCUCUU (((((((((....)))))))))(((.((((...((-..(((((.(-(((..((((.((......)).)))))))).))).))..))..))))))).... ( -33.70) >consensus CACACAGUUUGUCAAUUGUGUGGGUUGCCUGGACAAAGUGCCACAAGUCUCAGUUUC__GAUCCA__AGGAGGC_UGGCACGUCUUAAGGAUGCCCCUC .((((((((....))))))))((((..(((((((...((((((...(((((..................))))).))))))))))..)))..))))... (-27.26 = -27.82 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:02 2006