| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,299,468 – 10,299,560 |
| Length | 92 |
| Max. P | 0.903556 |
| Location | 10,299,468 – 10,299,560 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 80.73 |
| Mean single sequence MFE | -9.73 |
| Consensus MFE | -9.64 |
| Energy contribution | -9.64 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | 0.47 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10299468 92 - 23771897 CCACACUCUUAAAUUUUU--GCUUCAUUACCCCCCCCCCCCCCCCCAGUCGUUUUAAUAUUAUUUGCCUUGGCAACGCAGAGAGACGAACUAAG ..................--..........................(((((((((........((((....))))......)))))).)))... ( -9.64) >DroSec_CAF1 174369 87 - 1 CCACACUCUUAAAUUUUU--GCUGCAUUUUUUUU-----UUCCCCCAGUCGUUUUAAUAUUAUUUGCCUUGGCAACGCAGAGAGACGAACUAAG ..................--..............-----.......(((((((((........((((....))))......)))))).)))... ( -9.64) >DroYak_CAF1 183317 82 - 1 CCGC-UCCUUAAAUUUUUUUCUUGCAUUUUU-----------UCCCAGUCGUUUUAAUAUUAUUUGCCUUGGCAACGCAGAGAGACGAACUAAG ..((-..................))......-----------....(((((((((........((((....))))......)))))).)))... ( -9.91) >consensus CCACACUCUUAAAUUUUU__GCUGCAUUUUU__________CCCCCAGUCGUUUUAAUAUUAUUUGCCUUGGCAACGCAGAGAGACGAACUAAG ..............................................(((((((((........((((....))))......)))))).)))... ( -9.64 = -9.64 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:01 2006