Locus 3513

Sequence ID 3L_DroMel_CAF1
Location 10,296,380 – 10,296,483
Length 103
Max. P 0.506757
window5488

overview

Window 8

Location 10,296,380 – 10,296,483
Length 103
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 88.51
Mean single sequence MFE -19.08
Consensus MFE -13.39
Energy contribution -14.20
Covariance contribution 0.81
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.506757
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10296380 103 - 23771897
AUACAAUAUAUGUUUUUCUAAACAAAGCAGUGGUCAUUGAUCAUCUGCUGUAUUUUUCUACCU-CAACGAUAUAAUGAGAAACCAGUUCUGCAAUCGCAGAUAA
((((......(((((....))))).((((((((((...))))).)))))))))........((-((.........))))........(((((....)))))... ( -21.60)
>DroSec_CAF1 171332 99 - 1
AU-----AUAUGUUUUCCUAAGCAUAGCAGUGGUCAUUGAUCAUCUGCUGUAUUUUUCUACCUAUAGCGGUAUAAUGAGAAACCAGUUCUAGAAUCGCAGAUAA
.(-----((.(((..(.((((((((((((((((((...))))).))))))).((((((((((......))))....))))))...))).))).)..))).))). ( -21.80)
>DroEre_CAF1 182030 99 - 1
AC-----AUAUAUUUUUCUAAACAUUGCAGUGAUCAUUGAUCAUCUGCUGAAUUUUUCUACCUAUAGCGAUAUAAUGAGAAACCAGUUCUACAAUCGCAGAUAA
..-----.........(((.......(((((((((...))))).))))..................(((((....((((((.....)))).))))))))))... ( -17.60)
>DroYak_CAF1 180175 99 - 1
AU-----AUAUAUUUUUCUAAGCAUAGCUGUGAUCAUUGAUCAUCUGCUGUAUUUUUCUUCCUACAGCCAUAUAAUGAGAAACCAGUUCUACAAUCGCAGAUAA
..-----....................(((((((............((((((..........)))))).......((((((.....)))).))))))))).... ( -15.30)
>consensus
AU_____AUAUAUUUUUCUAAACAUAGCAGUGAUCAUUGAUCAUCUGCUGUAUUUUUCUACCUACAGCGAUAUAAUGAGAAACCAGUUCUACAAUCGCAGAUAA
..........(((((........((((((((((((...))))).)))))))...............(((((......((((.....))))...)))))))))). (-13.39 = -14.20 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:00 2006