Locus 3511

Sequence ID 3L_DroMel_CAF1
Location 10,293,517 – 10,293,608
Length 91
Max. P 0.559778
window5483

overview

Window 3

Location 10,293,517 – 10,293,608
Length 91
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -20.97
Consensus MFE -13.37
Energy contribution -13.90
Covariance contribution 0.53
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.64
SVM decision value 0.05
SVM RNA-class probability 0.559778
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10293517 91 - 23771897
UUUGCCAGAUAUUGGAUAUUGGCU-GGGCUCAAUAAUGAAAUUGGCU---GCCAAUACUUUCGGCAAAUAUCAAAGUCCCCAAA----AGAGUCU-----GCCA
((((((.((....((.(((((((.-.(((.((((......)))))))---))))))))).))))))))................----.......-----.... ( -21.90)
>DroSim_CAF1 174983 90 - 1
UUUGCCAGAUAUUGGAUAUUGGCU-GGGCUCAAUAAUGAAAUUGGCU---GCCAAUACUUUCGGCAAAUAUCAAAGUCC-CAAA----AGAGUCU-----GCCA
((((((.((....((.(((((((.-.(((.((((......)))))))---))))))))).))))))))...........-....----.......-----.... ( -21.90)
>DroEre_CAF1 179047 83 - 1
UUUGCCAGAUA-------UUGGCU-GGGCUCAAUAAUGAAAUUGGCU---GCCAAUACUUUCGGCAAAUAUCAAAGUCC-CAAA----AGAGUCU-----GCCA
(((((((((((-------(((((.-.(((.((((......)))))))---))))))).))).))))))...........-....----.......-----.... ( -21.20)
>DroYak_CAF1 177126 88 - 1
UUUGCCAGAUA-------UUGGCU-GGGCUCAAUAAUGAAAUUGGCU---GCCAAUACUUUCGGCAAAUAUCAAAGUCC-CAAA----AGAGUCUGCUCUGCCA
(((((((((((-------(((((.-.(((.((((......)))))))---))))))).))).))))))...........-....----((((....)))).... ( -24.90)
>DroAna_CAF1 179726 83 - 1
UUUGCCAGAUA-------UUGGCU-UUGCCCAAUAACCAAAUUGACU---GCCAAUACUUUCGGCAAAUAUGAAAGUCC-CAAA----AGCGUCU-----GCCA
..((.((((((-------(((((.-..(..((((......)))).).---))))))(((((((.......)))))))..-....----...))))-----).)) ( -17.40)
>DroPer_CAF1 181572 89 - 1
UUGCCCACAGAU----UAUUGGCCAUGGCUCAAUGAUGAAAUUGGUUUUCGCGAAUACUUUCGGCAAAUAUC-----UC-CAAAAAAAAGCGUCU-----AGCU
(((((.....((----(((((((....)).)))))))((((.....))))..(((....)))))))).....-----..-........(((....-----.))) ( -18.50)
>consensus
UUUGCCAGAUA_______UUGGCU_GGGCUCAAUAAUGAAAUUGGCU___GCCAAUACUUUCGGCAAAUAUCAAAGUCC_CAAA____AGAGUCU_____GCCA
((((((............(((((....)).))).......((((((....))))))......)))))).................................... (-13.37 = -13.90 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:55 2006