Locus 351

Sequence ID 3L_DroMel_CAF1
Location 1,017,830 – 1,017,922
Length 92
Max. P 0.909513
window519

overview

Window 9

Location 1,017,830 – 1,017,922
Length 92
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 86.11
Mean single sequence MFE -29.75
Consensus MFE -18.95
Energy contribution -19.07
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -3.06
Structure conservation index 0.64
SVM decision value 1.07
SVM RNA-class probability 0.909513
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1017830 92 - 23771897
GUAUACAUGUGUGCACAUGCCACAUACACAUACGCAUAUGUAUGCACCCCCAUGCGA--GUGUGUGUGUUUGCCCGUCUGUUUGUAUCUCCCUC
..(((((((((.((....)))))))..((((((((((.((((((......)))))).--))))))))))..............))))....... ( -26.50)
>DroSec_CAF1 637 86 - 1
GUGUACAUGUGUGCACAUGCCACAUACACA------UAUGUAUGCACCCCCGUGCGC--GUGUGUGUGUGUGCCUGUCUGUUUGUAUCUCCCUC
((((((....))))))..(.((((((((((------(((((..((((....))))))--))))))))))))).).................... ( -33.50)
>DroSim_CAF1 625 86 - 1
GUGUACAUGUGUGCACAUGCCACAUACACA------UAUGUAUGCACCCCCGUGCGC--GUGUGUGUGUGUGCCUGUCUGUUUGUAUCUCCCUC
((((((....))))))..(.((((((((((------(((((..((((....))))))--))))))))))))).).................... ( -33.50)
>DroEre_CAF1 636 78 - 1
GUGUACAUGUGUGUACAUACCACAU----------------AUGCACCCCCGUGCGCGUGUGUGUGUGUGUGCCUGUCUGUUUGUAUCUCCCUC
....(((.(.(..(((((((((((.----------------.(((((....)))))..)))).)))))))..)))))................. ( -25.50)
>consensus
GUGUACAUGUGUGCACAUGCCACAUACACA______UAUGUAUGCACCCCCGUGCGC__GUGUGUGUGUGUGCCUGUCUGUUUGUAUCUCCCUC
....(((..((.(((((((((((((..(((........))).(((((....)))))...))))).)))))))).))..)))............. (-18.95 = -19.07 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:50 2006