Locus 3509

Sequence ID 3L_DroMel_CAF1
Location 10,292,566 – 10,292,657
Length 91
Max. P 0.775367
window5479

overview

Window 9

Location 10,292,566 – 10,292,657
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.95
Mean single sequence MFE -27.53
Consensus MFE -26.20
Energy contribution -26.24
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.17
Structure conservation index 0.95
SVM decision value 0.54
SVM RNA-class probability 0.775367
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10292566 91 - 23771897
GCUCCCUGGGAUGUCACGAGACCAGACCGCCAUGGCGAAAGCUUCACUGUCGCAAAAAGUGACACCUGCAGAAGGCAGCCAAAUUAUGCAA
(((.((((((.((((((.......(((.(....(((....)))...).))).......))))))))).....))).)))............ ( -26.34)
>DroSec_CAF1 167528 91 - 1
GCUCCCUGGGAUGUCACGAGACCAGACCGCCAUGGCGAAAGCUUCACUGUCGCAAAAAGUGACACCUGCAGAAGGCAGCUAAAUUAUGCAG
(((..(((((.((((((.......(((.(....(((....)))...).))).......))))))))..)))..))).((........)).. ( -27.54)
>DroSim_CAF1 174039 91 - 1
GCUCCCUGGGAUGUCACGAGACCAGACCGCCAUGGCGAAAGCUUCACUGUCGCAAAAAGUGACACCUGCAGAAGGCAGCUAAAUUAUGCAG
(((..(((((.((((((.......(((.(....(((....)))...).))).......))))))))..)))..))).((........)).. ( -27.54)
>DroEre_CAF1 178067 90 - 1
GCUCCCUGGGAUGUCACGAGAGCAGACCGCCG-GGCGAAAGCUUCACUGUCGCAAAAAGUGACACCUGCAGAAGGCAGCUAAAUCAUGUGC
(((.((((((.((((((....((.(((.(..(-(((....))))..).))))).....))))))))).....))).)))............ ( -28.90)
>DroYak_CAF1 176153 90 - 1
GCUCCCUAGGAUGUCACGAGACCAGACCUCCG-GGCGAAAGCUUCACUGUCGCAAAAAGUGACACCUGCAGAAGGCCGCUAAAUUAUGUGG
..((..((((.((((((.......(((....(-(((....))))....))).......))))))))))..))...((((........)))) ( -27.34)
>consensus
GCUCCCUGGGAUGUCACGAGACCAGACCGCCAUGGCGAAAGCUUCACUGUCGCAAAAAGUGACACCUGCAGAAGGCAGCUAAAUUAUGCAG
(((.((((((.((((((.......(((......(((....))).....))).......))))))))).....))).)))............ (-26.20 = -26.24 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:51 2006