| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,291,783 – 10,291,876 |
| Length | 93 |
| Max. P | 0.720309 |
| Location | 10,291,783 – 10,291,876 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.03 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -13.88 |
| Energy contribution | -16.52 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10291783 93 + 23771897 CAU--GCCCGUUGGCAUCAAUCAAAGUGAUUGUUGAAAUGGAUUUCAAACAUGUCAGUUCAGUCAGUGGGCAGUG-CUGGCUGCAA-UCUGACU-GCA ..(--(((((((..((.(((((.....))))).)).)))))...........(((((((((((((((.......)-))))))).))-.))))).-))) ( -30.10) >DroVir_CAF1 200115 80 + 1 UGUGUGUCGUUUAG--UCUGUCAAAGUG-------AAAUGGGUCG--G-GCUGUCAGCUUGAGCUUUGG-CUGUGAGCGGC----A-UCACAUUCGAA (((((((((((((.--...((((((((.-------.......(((--(-((.....)))))))))))))-)..))))))))----)-.))))...... ( -28.50) >DroSec_CAF1 166755 89 + 1 CAU--GCCCGUUGGCAUCAAUCAAAGUGAUUGUUGAAAUGGAUUUCAAACAUGUCAGCUCGGCCAGUGGGCAGUG-CUGGC----A-UCUGACU-GCA ..(--(((((((..((.(((((.....))))).)).)))))...(((...((((((((.(.(((....))).).)-)))))----)-).)))..-))) ( -30.30) >DroSim_CAF1 173264 89 + 1 CAU--GCCCGUUGGCAUCAAUCAAAGUGAUUGUUGAAAUGGAUUUCAAACAUGUCAGCUCGACCAGUGGGCAGUG-CUGGC----A-UCUGACU-GCA ..(--(((((((..((.(((((.....))))).)).)))))...(((...((((((((.(..((....))..).)-)))))----)-).)))..-))) ( -27.70) >DroEre_CAF1 177294 90 + 1 CAU--GCCCGUUGGCAUCAAUCAAAGUGAUUGUUGAAAUGGAUUUCAAACAUGUCGGCUCAGCCAGUGGGCAGUG-UUGGA----AUUCUGACU-GCA ..(--((((((((((...((((.....))))(((((.(((.........))).)))))...)))))))))))(((-(..(.----...)..)).-)). ( -30.30) >DroYak_CAF1 175380 90 + 1 CAU--GCCCGUUGGCAUCAAUCAAAGUGAUUGUUGAAAUGGAUUUCAAGCACGUCAGUUCAGCCAGUGGGCAGUG-UUGGA----AUUUUGACU-GUA ..(--((((((((((..(((((.....))))).((((...(((.........)))..)))))))))))))))..(-(..(.----...)..)).-... ( -26.50) >consensus CAU__GCCCGUUGGCAUCAAUCAAAGUGAUUGUUGAAAUGGAUUUCAAACAUGUCAGCUCAGCCAGUGGGCAGUG_CUGGC____A_UCUGACU_GCA .....((((((((((..(((((.....)))))((((((....)))))).............))))))))))........................... (-13.88 = -16.52 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:50 2006