Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,280,566 – 10,280,659 |
Length | 93 |
Max. P | 0.728053 |
Location | 10,280,566 – 10,280,659 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 89.91 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -26.76 |
Energy contribution | -27.07 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.90 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10280566 93 - 23771897 CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACACACACACA .((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))(((((......)).)))......... ( -29.90) >DroSec_CAF1 155534 91 - 1 CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUUGCACACA--CACGCU (((((((.((((((((.....))))(((((...(((....))).....))))).))))...)))))))......((.((......--)).)). ( -30.60) >DroSim_CAF1 161640 91 - 1 CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACA--CACGCU .((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))(((((......)).))).--...... ( -29.90) >DroEre_CAF1 165844 83 - 1 CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACA--CA-------- .((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))((((.....)))).--..-------- ( -29.70) >DroYak_CAF1 163536 85 - 1 CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACA-------- .((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))(((((......)).))).-------- ( -29.90) >DroAna_CAF1 167521 91 - 1 --AAGACUUGCCGGGCGCAAGGCCCAGAAGCUACUGCCCACAGAAGUUCUGGCUGGCAUUUGUUUUUGUGGUCCGUUCGCACACACCCUCACA --......(((.(((((...(((((((((((...((((..(((.....)))...))))...))))))).))))))))))))............ ( -29.10) >consensus CGAAGACUUGCCGGGCGUAAGGCCCGCCAGCUACUGCCCACAGAACUUCUGGCUGGCAUUUGUUUUUGUGGUCCGCUCACACACA__CAC_C_ .((((((.((((((((.....))))(((((...(((....))).....))))).))))...))))))((((.....))))............. (-26.76 = -27.07 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:42 2006