Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,277,468 – 10,277,560 |
Length | 92 |
Max. P | 0.830301 |
Location | 10,277,468 – 10,277,560 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.74 |
Mean single sequence MFE | -20.52 |
Consensus MFE | -18.46 |
Energy contribution | -18.90 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.90 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10277468 92 + 23771897 UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUACAAUUCGCUUCAAAAUAGUAGAAGUU ...(((((((((((.......))))))))....((.(((((((((((....)))))..)))))).))..)))(((((.........))))). ( -20.90) >DroSec_CAF1 152478 92 + 1 UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUACUACAAUUCGCUUCAAAAUAGUAGAAGUU ......((((((((.......))))))))..((((((.....(((((....)))))((.....)).))))))(((((.........))))). ( -17.60) >DroSim_CAF1 158561 92 + 1 UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUACAAUUCGCUUCAAAAUAGUGGAACUU ......((((((((.......))))))))..(((((.....((((.((((((......))))))))))..(((((.......)))))))))) ( -21.90) >DroEre_CAF1 162766 92 + 1 UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUAUAAUUCGCUUCAAGAUAGUGGAAGUU ......((((((((.......))))))))..((((((((((((((((....)))))..))))))...)))))(((((.........))))). ( -20.60) >DroYak_CAF1 160340 92 + 1 UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUAAGUUUGCUACAAUUCGCUUCAAAAUAGUGGAAGUU ......((((((((.......))))))))....((.(((((((((((....)))))..)))))).))..((((((.......)))))).... ( -21.60) >consensus UCAGGAGGAAUUUGCCUUUAUUAAAUUCCAAGAGUUGCAAAUGUAUGCAAGCAUAUGGGUUUGCUACAAUUCGCUUCAAAAUAGUGGAAGUU ......((((((((.......))))))))....((.(((((((((((....)))))..)))))).))..((((((.......)))))).... (-18.46 = -18.90 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:41 2006