| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,277,269 – 10,277,368 |
| Length | 99 |
| Max. P | 0.629453 |
| Location | 10,277,269 – 10,277,368 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.83 |
| Mean single sequence MFE | -20.34 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.83 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10277269 99 - 23771897 ---UUCCCU-GCGAAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGACGUCAGUGGCAGGCAUCCACCAGAGGUUUCC---CACAUCUUC---C-CCCUCAUCUAGCC ---......-((...........((((((((...((.((........))))...)))))))).........((((.....---.........---.-.)))).....)). ( -19.99) >DroSec_CAF1 152280 100 - 1 ---UUCCCU-GCGAAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGACGUCAGUGGCAGGCAUCAACCAGAGGCUUCC---CACAUCUUC---CCCCCUCAUCUAGCC ---......-((...........((((((((...((.((........))))...)))))))).........((((.....---.........---...)))).....)). ( -19.63) >DroSim_CAF1 158364 99 - 1 ---UUCCCU-GCGAAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGACGUCAGUGGCAGGCAUCCACCAGAGGCUUUC---CACAUCUUC---C-CCCUCAUCUAGCC ---......-((...........((((((((...((.((........))))...)))))))).........((((.....---.........---.-.)))).....)). ( -19.69) >DroEre_CAF1 162568 102 - 1 ---UUCCCU-GCCAAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGACGUCAGUGGCAGGCAUCCACCAGAGGUUUCCCCCCACAUCUUU---G-CCCUCAUCUAGCC ---......-((...........((((((((...((.((........))))...)))))))).........((((.................---.-.)))).....)). ( -18.91) >DroYak_CAF1 160137 103 - 1 ---UUCCCUUACGAAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGACGUCAGUGGCAGGCAUCCACCAGAGGUUUCC---CACAUCUACCACC-UCCUCAUCUAGCC ---.........((.........((((((((...((.((........))))...)))))))).........(((((....---..........)))-)).))........ ( -19.24) >DroAna_CAF1 164612 81 - 1 AGGCUCUCU-CUGGAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGCCGUCAGUGGCAGGCAUCU-CCAGAUGC-------------------C-CCUU-------CC .(((....(-(((((........((((((((...((((........)).))...))))))))....)-))))).))-------------------)-....-------.. ( -24.60) >consensus ___UUCCCU_GCGAAAUCAUUAAUCUGCCACACUCGCUCAGACAUCAGACGUCAGUGGCAGGCAUCCACCAGAGGCUUCC___CACAUCUUC___C_CCCUCAUCUAGCC .......................((((((((...((((........)).))...)))))))).........((((.......................))))........ (-15.50 = -15.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:40 2006