Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,017,297 – 1,017,394 |
Length | 97 |
Max. P | 0.883007 |
Location | 1,017,297 – 1,017,394 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 71.09 |
Mean single sequence MFE | -29.96 |
Consensus MFE | -22.34 |
Energy contribution | -21.65 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.33 |
Mean z-score | -1.00 |
Structure conservation index | 0.75 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.883007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1017297 97 - 23771897 UUUAACCACCCCUCCC----------CCUUCC----------CCUGCCGACGGCAUGGACGGCCAGCGGGCCAGGGAUCUCCUGACCCUCCUCCAGGAACGGGUCGUCUUCCUCACG ....((.((((.((((----------.....(----------(.((((...)))).))..((((....)))).))))..(((((.........)))))..)))).)).......... ( -31.80) >DroVir_CAF1 115 117 - 1 UGCUCCCUACCCGCCCCCACCUCCUCCUCCACCCUCGCACACAACAACAACAACAUGGAUGGUCAACGUGCUCGCGAUCUGCUGACGCUUCUGCAGGAGCGCGUCGUAUUUCUCACU .(((((.....(((...(((.....((((((........................)))).)).....)))...)))...(((.((....)).))))))))................. ( -21.56) >DroSec_CAF1 121 95 - 1 AUUAACUCCCCCCC------------CUCCCC----------CCUGUCGACGGCAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAGCGGGUCGUCUUCCUCACG ..............------------......----------...((.((.((...((((((((.(((((.((((.....)))).)))(((....))))).)))))))).)))))). ( -33.20) >DroSim_CAF1 115 93 - 1 AUUAACUCCC--CC------------CUCCCC----------CCUGCCGACGGCAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAGCGGGUCGUCUUCCUCACG ..........--..------------......----------......((.((...((((((((.(((((.((((.....)))).)))(((....))))).)))))))).))))... ( -33.00) >DroEre_CAF1 115 97 - 1 ACUAACACCCUCCCCC----------CACCCC----------CCCUCUGUCGCCAUGGAUGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAACGGGUCGUCUUCCUCACG ....((((((......----------..(((.----------(((.(((..((((....))))))).)))...)))...(((((.........)))))..)))).)).......... ( -28.50) >DroYak_CAF1 121 84 - 1 AUUAAC--CCUCGCCC----------C---------------------GCUGAAAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUGCAGGAACGGGUCGUCUUCCUCACG .....(--(((.((((----------.---------------------((((...........)))))))).)))).......((((((((....)))..)))))............ ( -31.70) >consensus AUUAACCCCCCCCCCC__________CUCCCC__________CCUGCCGACGGCAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAACGGGUCGUCUUCCUCACG ........................................................((((((((...(((.((((.....)))).)))(((....)))...))))))))........ (-22.34 = -21.65 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:48 2006