Locus 350

Sequence ID 3L_DroMel_CAF1
Location 1,017,297 – 1,017,394
Length 97
Max. P 0.883007
window518

overview

Window 8

Location 1,017,297 – 1,017,394
Length 97
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 71.09
Mean single sequence MFE -29.96
Consensus MFE -22.34
Energy contribution -21.65
Covariance contribution -0.69
Combinations/Pair 1.33
Mean z-score -1.00
Structure conservation index 0.75
SVM decision value 0.92
SVM RNA-class probability 0.883007
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1017297 97 - 23771897
UUUAACCACCCCUCCC----------CCUUCC----------CCUGCCGACGGCAUGGACGGCCAGCGGGCCAGGGAUCUCCUGACCCUCCUCCAGGAACGGGUCGUCUUCCUCACG
....((.((((.((((----------.....(----------(.((((...)))).))..((((....)))).))))..(((((.........)))))..)))).)).......... ( -31.80)
>DroVir_CAF1 115 117 - 1
UGCUCCCUACCCGCCCCCACCUCCUCCUCCACCCUCGCACACAACAACAACAACAUGGAUGGUCAACGUGCUCGCGAUCUGCUGACGCUUCUGCAGGAGCGCGUCGUAUUUCUCACU
.(((((.....(((...(((.....((((((........................)))).)).....)))...)))...(((.((....)).))))))))................. ( -21.56)
>DroSec_CAF1 121 95 - 1
AUUAACUCCCCCCC------------CUCCCC----------CCUGUCGACGGCAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAGCGGGUCGUCUUCCUCACG
..............------------......----------...((.((.((...((((((((.(((((.((((.....)))).)))(((....))))).)))))))).)))))). ( -33.20)
>DroSim_CAF1 115 93 - 1
AUUAACUCCC--CC------------CUCCCC----------CCUGCCGACGGCAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAGCGGGUCGUCUUCCUCACG
..........--..------------......----------......((.((...((((((((.(((((.((((.....)))).)))(((....))))).)))))))).))))... ( -33.00)
>DroEre_CAF1 115 97 - 1
ACUAACACCCUCCCCC----------CACCCC----------CCCUCUGUCGCCAUGGAUGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAACGGGUCGUCUUCCUCACG
....((((((......----------..(((.----------(((.(((..((((....))))))).)))...)))...(((((.........)))))..)))).)).......... ( -28.50)
>DroYak_CAF1 121 84 - 1
AUUAAC--CCUCGCCC----------C---------------------GCUGAAAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUGCAGGAACGGGUCGUCUUCCUCACG
.....(--(((.((((----------.---------------------((((...........)))))))).)))).......((((((((....)))..)))))............ ( -31.70)
>consensus
AUUAACCCCCCCCCCC__________CUCCCC__________CCUGCCGACGGCAUGGACGGCCAGCGGGCCAGGGACCUCCUGACCCUCCUCCAGGAACGGGUCGUCUUCCUCACG
........................................................((((((((...(((.((((.....)))).)))(((....)))...))))))))........ (-22.34 = -21.65 +  -0.69) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:48 2006