| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 126,427 – 126,527 |
| Length | 100 |
| Max. P | 0.616969 |
| Location | 126,427 – 126,527 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.41 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -19.69 |
| Energy contribution | -19.63 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 126427 100 - 23771897 CUUUUGUUGCUCGAGACGCUGCAGCUUCUCGGCAUCGUUCAGGUCGAAAGAGUCUGAAGAAAAACA---AUACAUUCAUUAGCCAACGUAUUUUU-----CUGGGGCA ...(((((((.(((((.((....)).))))))).((.((((((((....)).))))))))..))))---)...........(((...(.......-----)...))). ( -27.80) >DroSec_CAF1 543 100 - 1 CUUUUGUUGCUCGAGACGCUGCAGCUUCUCGGCAUCGUUCAGGUCGAAAGAGUCUGAAGAAAAACA---AAACAUUUAUUAGCCCACGUCUUUGU-----CUGGGGCA .(((((((((.(((((.((....)).))))))).((.((((((((....)).))))))))..))))---))).........((((.((.......-----.)))))). ( -33.60) >DroSim_CAF1 1128 100 - 1 CUUUUGUUGCUCGAGACGCUGCAGCUUCUCGGCAUCGUUCAGGUCGAAAGAGUCUGAAGAAAAACA---AAACAUUUAUUAGCCGACGUCUUUGU-----CUGGGGCA .(((((((((.(((((.((....)).))))))).((.((((((((....)).))))))))..))))---))).........(((((((....)))-----)...))). ( -33.00) >DroEre_CAF1 1138 101 - 1 CUUUUGUUGCUCGAGACGCUGUAGCUUCUCGGCAUCGUUCAGGUCGAAGGAGUCUGAAGAAAAA-AA-UAUAUAUUUAUAAGUCAACGUCUCCGU-----CUAGGGCA .......(((((.((((((((........)))).((.((((((((....)).))))))))....-..-.........................))-----)).))))) ( -25.40) >DroYak_CAF1 1138 101 - 1 CUUUUGUUGCUCGAGGCGCUGCAGCUUCUCGGCAUCGUUCAGGUCGAAGGAGUCUGAAGAAGAAGAA-AAUACAUUUAUAAGU-AAUUUAUAAGU-----UGUGGGCA (((((..(((.(((((.((....)).))))))))((.((((((((....)).)))))))))))))..-..((((((((((((.-..)))))))).-----)))).... ( -26.80) >DroPer_CAF1 1119 108 - 1 CUUCUGCUGCUCCAGACGCUGCAGCUUCUCGGCAUCGCUCAAGUCAAAGGAGUCUGGAGGGAAAGAUGGAGACAUGGAGAGGUUAGAAUGCUGCUCACGAAAGGAGGG .(((((((.((((...(.((.((((((((.(((.........)))..))))).))).)).)....(((....))))))).)).))))).....(((.(....)))).. ( -33.10) >consensus CUUUUGUUGCUCGAGACGCUGCAGCUUCUCGGCAUCGUUCAGGUCGAAAGAGUCUGAAGAAAAACA___AUACAUUUAUAAGCCAACGUCUUUGU_____CUGGGGCA .......(((.(((((.((....)).))))))))((.((((((((....)).)))))))).....................(((....................))). (-19.69 = -19.63 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:23 2006