| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,269,658 – 10,269,757 |
| Length | 99 |
| Max. P | 0.652849 |
| Location | 10,269,658 – 10,269,757 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -24.32 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.67 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10269658 99 + 23771897 AAGGCAAAGUAUUAGAAAUACAAUAAAGUCGAGUCAAAGUGAAAAGUUUUACGCAGCGGCUGCCGCAGC---UACUGCGUAUUUUCCGUCC--------ACACCCCCCAA ..(((...((((.....)))).................(.(((((....(((((((..((((...))))---..)))))))))))))))).--------........... ( -22.50) >DroSec_CAF1 144848 107 + 1 AAGGCAAAGUAUUAGAAAUACAAUAAAGUCGAGUCAAAGUGAAAAGUUUUACGCAGCGGCUGCCGCAGC---UACUGCGUAUUUUCCGUCCACCCCGCCACACCCCACCA ..(((...((((.....)))).................(.(((((....(((((((..((((...))))---..))))))))))))).........)))........... ( -26.10) >DroSim_CAF1 150727 90 + 1 AAGGCAAAGUAUUAGAAAUACAAUAAAGUCGAGUCAAAGUGAAAAGUUUUACGCAGCGGCUGCCGCAGC---UACUGCGUAUUUUC-----------------CCCACCA ..((....((((.....))))...................(((((....(((((((..((((...))))---..))))))))))))-----------------....)). ( -21.00) >DroEre_CAF1 154891 100 + 1 AAGGCAAAGUAUUAGAAAUACAAUAAAGUCGAGUCAAAGUGAAAAGUUUUACGCAGCGGCUGCCGCAGC---UACUGCGUAUUUUCCGCCCACCCC-----A--CCCCCA ..(((...((((.....)))).................(.(((((....(((((((..((((...))))---..))))))))))))))))......-----.--...... ( -25.20) >DroWil_CAF1 232324 89 + 1 AAAGCAAAGUAUUAGAAAUACAAUAAAGUGGAGUCAAAGUGAAAAGUUUUACGCAGUGGCGGCUGCCGCUGCUGGUGCUACUACUCCAG--------------------- ........((((.....)))).......((((((....(((((....)))))(((.(((((((....))))))).)))....)))))).--------------------- ( -26.30) >DroYak_CAF1 152325 105 + 1 AAGGCAAAGUAUUAGAAAUACAAUAAAGUCGAGUCAAAGUGAAAAGUUUUACGCAGCGGCUGCCGCAGC---UACUGCGUAUUUUCCACCCACCCCCCUCUA--CACCCA ..((....((((.....))))......((.(((.....(((........(((((((..((((...))))---..))))))).........)))....))).)--)..)). ( -24.83) >consensus AAGGCAAAGUAUUAGAAAUACAAUAAAGUCGAGUCAAAGUGAAAAGUUUUACGCAGCGGCUGCCGCAGC___UACUGCGUAUUUUCCGCCC__________A__CCCCCA ..(((...((((.....)))).....(((((.......(((((....)))))....))))))))((((......))))................................ (-16.42 = -16.67 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:38 2006