| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,269,446 – 10,269,541 |
| Length | 95 |
| Max. P | 0.632944 |
| Location | 10,269,446 – 10,269,541 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.75 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -20.01 |
| Energy contribution | -19.95 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10269446 95 - 23771897 AAAA-GGGGAUAUCCCAGGGUCUUCCCGGGGAUCCCCCCAUUAGUUCACUGGGGUUCAAGUGGAGCCAAGACAGCAAUCUCACACACACAU-ACAGA ....-((((..(((((.(((....))).)))))..)))).........(((.(((((.....)))))..((.(....).))..........-.))). ( -31.40) >DroSec_CAF1 144639 92 - 1 AAAA-GGGGAUAUCCCAGGGUCUUCUAGGGGAUCCCCCCAUUAGUUCACUAGGGUUCAAGUGGAGCCAAGACAGCAG-CUCACACACAC---ACAGA ....-((((((.((((.((.....)).))))))))))((.((((....)))))).....(((((((..........)-))).)))....---..... ( -27.50) >DroSim_CAF1 150518 92 - 1 AAAA-GGGGAUAUCCCAGGGUCUUCUACGGGAUCCCCCCAUUAGUUCACUGGGGUUCAAGUGGAGCCAAGACAGCAG-CUCACACACAC---ACAGA ....-((((..(((((..((....))..)))))..)))).........(((..((....(((((((..........)-))).)))..))---.))). ( -27.20) >DroYak_CAF1 152114 94 - 1 AAAAGGGGGAAAUUCCAGGUUCUUCCAUGGGAUCCC-CCGUCAGUUCACUGGGGUUCAAGUGGAGCGAAGACAGCAG-CUCUCACACAAA-AACACA ....((((((..(((((((.....)).)))))))))-)).((((....)))).......(((((((..........)-))).))).....-...... ( -31.20) >consensus AAAA_GGGGAUAUCCCAGGGUCUUCCAGGGGAUCCCCCCAUUAGUUCACUGGGGUUCAAGUGGAGCCAAGACAGCAG_CUCACACACAC___ACAGA .....((((..(((((..((....))..)))))..)))).((((....))))(((((.....))))).............................. (-20.01 = -19.95 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:37 2006