Locus 3496

Sequence ID 3L_DroMel_CAF1
Location 10,266,589 – 10,266,679
Length 90
Max. P 0.500000
window5459

overview

Window 9

Location 10,266,589 – 10,266,679
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 93.43
Mean single sequence MFE -27.42
Consensus MFE -22.18
Energy contribution -22.23
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -2.03
Structure conservation index 0.81
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10266589 90 + 23771897
CCUGAUUAGAAUCGACUG-UGGACACGCAUCGUUGGCAUUGAAUGGCUAAAGGUUGCCAAAGUGUCAGCACACAUAACGAUGUUCCGAUUC
........((((((..((-((....))))..(((((((((...((((........)))).)))))))))................)))))) ( -26.70)
>DroSec_CAF1 141740 90 + 1
CCUGAUUAGAAUCGACUG-UGGACACGCAUCGUUGGCAUUGAAUGGCUAAAGGUUGCCAAAGUGUCAGCACACAUAACGAUGUUCCGAUUC
........((((((..((-((....))))..(((((((((...((((........)))).)))))))))................)))))) ( -26.70)
>DroSim_CAF1 147581 90 + 1
CCUGAUUAGAAUCGACUG-UGGACACGCAUCGUUGGCAUUGAAUGGCUAAAGGUUGCCAAAGUGUCAGCACACAUAACGAUGUUCCGAUUC
........((((((..((-((....))))..(((((((((...((((........)))).)))))))))................)))))) ( -26.70)
>DroEre_CAF1 152020 90 + 1
UCUGAUUAGAAUCGACUG-UGGACACGCAUCGUUGGCAUUGAAUGGCUAAAGGUUGCCAAAGUGUCAGCACACAUAAAGAUGUUCCGAUUC
........((((((..((-((....))))..(((((((((...((((........)))).)))))))))................)))))) ( -26.70)
>DroYak_CAF1 149401 90 + 1
UCUGAUUAGAAUCGACUG-UGGACACGCAUCGUUGGCAUUGAAUGGCUAAAGGUUGCCAAAGUGUCAGCACACAUAAAGAUGUUCCGAUUC
........((((((..((-((....))))..(((((((((...((((........)))).)))))))))................)))))) ( -26.70)
>DroAna_CAF1 154391 88 + 1
CCUGAUUAGAAUCGACUGGCGGAUACGCAUCGCUGGCAUUGAAUGGCUUAAGGUUGCCAAAGUGUCAGCAUACAGAAUG---GUUCCAUAC
........((((((.((((((....)))...(((((((((...((((........)))).)))))))))...)))..))---))))..... ( -31.00)
>consensus
CCUGAUUAGAAUCGACUG_UGGACACGCAUCGUUGGCAUUGAAUGGCUAAAGGUUGCCAAAGUGUCAGCACACAUAACGAUGUUCCGAUUC
........((((((..((.((....))))..(((((((((...((((........)))).)))))))))................)))))) (-22.18 = -22.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:32 2006