| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,264,106 – 10,264,202 |
| Length | 96 |
| Max. P | 0.893823 |
| Location | 10,264,106 – 10,264,202 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 89.56 |
| Mean single sequence MFE | -21.08 |
| Consensus MFE | -14.80 |
| Energy contribution | -16.00 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10264106 96 - 23771897 CACCCCAUCACC-CCAGGCACAUACUUUUGUAUGUGUACACAGAUAUCUAUCUGACAGUAGUCACUCCAACAGAUAACAGUGAACUAUCAUUUCGGG ...........(-((..((((((((....))))))))...(((((....)))))...(((((((((............)))).)))))......))) ( -23.90) >DroSec_CAF1 139318 97 - 1 CACCCCAUCACCCCCAGGCACACACUUUUGUAUGUGUACACAGAUAUCUAUCUGACAGUAGUCACUCCAACAGAUAACAGUGAACUAUCAUUUCUGG .............(((((((((.((....)).)))))...(((((....)))))...(((((((((............)))).))))).....)))) ( -20.10) >DroSim_CAF1 145157 97 - 1 CACCCCAUCACCCCCAGGCACAUACUUUUGUAUGUGUACACAGAUAUCUAUCUGACAGUAGUCUCUCCAACAGAUAACAGUGAACUAUCAUUUCUGG .............((((((((((((....))))))))...(((((....)))))...((.((((.......)))).))(((((....))))).)))) ( -22.10) >DroEre_CAF1 149390 92 - 1 CACGCCGCCACC-CCAGGCACAUACUUUUGUAUGUGUACACAGAUAUCUAUCGGACAGUAGUCACUC-UACGGAUAACACCUAACUA---UAUCUAA ....(((((...-....((((((((....)))))))).....(((....))))).).((((.....)-)))))..............---....... ( -18.50) >DroYak_CAF1 146854 96 - 1 CACCCCAUCACC-CCAGGCACAUACUUUUGUAUGUGUACACAGAUAUCUAUCUGACAGUAGUCACUCUUACUGAUAACAUUGAACUAUAAUAUCUGC ............-.(((((((((((....))))))))...(((((....))))).((((((......))))))....................))). ( -20.80) >consensus CACCCCAUCACC_CCAGGCACAUACUUUUGUAUGUGUACACAGAUAUCUAUCUGACAGUAGUCACUCCAACAGAUAACAGUGAACUAUCAUUUCUGG .............((((((((((((....))))))))...(((((....)))))...((.(((.........))).))...............)))) (-14.80 = -16.00 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:31 2006