Locus 3490

Sequence ID 3L_DroMel_CAF1
Location 10,253,670 – 10,253,767
Length 97
Max. P 0.763390
window5449

overview

Window 9

Location 10,253,670 – 10,253,767
Length 97
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.99
Mean single sequence MFE -31.57
Consensus MFE -20.70
Energy contribution -22.46
Covariance contribution 1.76
Combinations/Pair 1.27
Mean z-score -2.20
Structure conservation index 0.66
SVM decision value 0.51
SVM RNA-class probability 0.763390
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10253670 97 - 23771897
UU--CGAGAUGGGUGGUUAUCCCAAGUGUCCUGGCAGUUGCUGUUU--CUGUUUUGCUGCCAGGGAAAACAAAUAUCGAUUCCAUCCCUUAAGCC-CUGGCA
..--.(.(((((((((.....))).((.((((((((((.((.....--..))...))))))))))...))..........)))))).)....((.-...)). ( -31.70)
>DroPse_CAF1 140866 88 - 1
ACUGUGGGGUGGUAGGGUGGUCCG------GUGGCAGUUGUUUUUUUCCCGUU-------UAUAGAAAACAAAUAUCGAUUCCAUCCCUUAAGCU-UUGGCA
....(..(((...(((((((..((------(((....(((((((((.......-------...))))))))).)))))...))).))))...)))-..)... ( -23.90)
>DroSec_CAF1 129304 92 - 1
UU--CAAGAUGGGUGGAUGUCCCGAGU-----GGCAGUUGCUGUUU--CUGUUUUGCUGCCAGGGAAAACAAAUAUCGAUUCCAUCCCUUAAGCC-CUGGCA
..--......(((((((..((((...(-----((((((.((.....--..))...)))))))))))..............))))))).....((.-...)). ( -28.49)
>DroEre_CAF1 138023 97 - 1
UU--UAAGAUGGGUGGAUGUCCCGAGUGUCCUGGCAGUUGCUGUUU--CUGUUUUGCUGCCAGGGAAAACAAAUAUCGAUUCCAUCCCUUAAGCC-CUGGCA
.(--((((..(((((((.....(((.((((((((((((.((.....--..))...)))))))))....)))....)))..))))))))))))((.-...)). ( -35.10)
>DroYak_CAF1 136283 97 - 1
UU--CAAGAUGGGUGGAUGUCCCGCGUGUCCUGGCAGUUGCUGUUU--CUGUUUUGCUGCCAGGGAAAACAAAUAUCGAUUCCAUCCCUUAAGCC-CUGGCA
..--...(((((((((.....))))((.((((((((((.((.....--..))...))))))))))...))...........)))))......((.-...)). ( -34.70)
>DroAna_CAF1 142204 96 - 1
U----GGGAUGGUUGUAUCUCCUGGGUGUCCUGGCAGUUGCUGUUU--CUGUUUUGCUGCCAGGGAAAACAAAUAUCGAUUCCAUCCCUUAAGCUUCUGGCA
.----(((((((....(((......((.((((((((((.((.....--..))...))))))))))...)).......))).)))))))....((.....)). ( -35.52)
>consensus
UU__CAAGAUGGGUGGAUGUCCCGAGUGUCCUGGCAGUUGCUGUUU__CUGUUUUGCUGCCAGGGAAAACAAAUAUCGAUUCCAUCCCUUAAGCC_CUGGCA
.......((((((..(((((........((((((((((.((.........))...)))))))))).......)))))...))))))......(((...))). (-20.70 = -22.46 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:23 2006