Locus 3488

Sequence ID 3L_DroMel_CAF1
Location 10,250,067 – 10,250,162
Length 95
Max. P 0.546204
window5447

overview

Window 7

Location 10,250,067 – 10,250,162
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.25
Mean single sequence MFE -22.90
Consensus MFE -17.07
Energy contribution -17.23
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.546204
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10250067 95 - 23771897
---AAGAAAUCAUCAGCACGUGGCUGAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUG-AGAAAGUGAUUAG-GGUGGGGUAUGAACAGUAAAAU------CGAGU
---......((.(((((.....))))).....((((.(((((.(((((..(((.(((.-....))).)))..-))))).)))))..)))).....------.)).. ( -24.80)
>DroPse_CAF1 137015 90 - 1
--AAAGAAAUCAUCAGCACGUGGCUGAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUGGAGAAAGUGAUUAG-AGUGGGAGCC--AUAGAGAA-----------AU
--..........(((((.....)))))......((..(((((.(((((..(((.(((......))).)))..-)))))..).)--)))..)).-----------.. ( -20.70)
>DroEre_CAF1 134414 96 - 1
--AAAGAAAUCAUCAGCACGUGGCUGAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUG-AGAAAGUGAUUAG-GGUGGGGUAUGAACAGUAAAAA------AGAGU
--.......((.(((((.....))))).....((((.(((((.(((((..(((.(((.-....))).)))..-))))).)))))..)))).....------.)).. ( -24.70)
>DroYak_CAF1 132560 96 - 1
--AAAGAAAUCAUCAGCACGUGGCUUAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUG-AGAAAGUGAUUAG-GGUGGGGUAUGCACUGCAAAAU------AGAGU
--.............(((..((((...))))...((.(((((.(((((..(((.(((.-....))).)))..-))))).))))))).))).....------..... ( -24.10)
>DroAna_CAF1 135644 104 - 1
CAAAAGAAAUCAUCAGCACGUGGCUGAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUG-GGAGAGUGAUUGUGGGUGGGG-AAAAAUAGCGAACUUAUCGGAGAAG
..........(((...(((....((.(((((..(((((.......)))))..))))).-))...)))...)))((((((.-............))))))....... ( -22.42)
>DroPer_CAF1 137240 90 - 1
--AAAGAAAUCAUCAGCACGUGGCUGAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUGGAGAAAGUGAUUAG-AGUGGGAGCC--AUAGAGAA-----------AU
--..........(((((.....)))))......((..(((((.(((((..(((.(((......))).)))..-)))))..).)--)))..)).-----------.. ( -20.70)
>consensus
__AAAGAAAUCAUCAGCACGUGGCUGAGCCAAAUUGAUAUGCGCCAUUAGGGUGGCUG_AGAAAGUGAUUAG_GGUGGGGUAUGAACAGAAAAAU______AGAAU
.......((((((((((.....))))(((((..(((((.......)))))..))))).......)))))).................................... (-17.07 = -17.23 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:21 2006