| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,242,470 – 10,242,564 |
| Length | 94 |
| Max. P | 0.540387 |
| Location | 10,242,470 – 10,242,564 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 86.00 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -13.98 |
| Energy contribution | -14.18 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10242470 94 + 23771897 CGCACGCGA----------ACAUUCAAAUGCAAAUACUCGAAUGCCAGAAUGCAAAA-------UCCGAAAUGCAAAAAUUAUCCAAAAAUGCAAAUUUG-CGAGUGCGAAA----- (((((..((----------....))...(((((((..(((..(((......)))...-------..)))..((((...............)))).)))))-)).)))))...----- ( -17.16) >DroSec_CAF1 118309 94 + 1 CGCACGCGA----------ACAUUCAAAUGCAAAUACUCGAAUGCCAGAAUGCAAAA-------UCCGAAAUGCAAAAAUUAUCCAAAAAUGCAAAUUUG-CGAGUGCGAAA----- (((((..((----------....))...(((((((..(((..(((......)))...-------..)))..((((...............)))).)))))-)).)))))...----- ( -17.16) >DroSim_CAF1 123646 94 + 1 CGCACGCGA----------ACAUUCAAAUGCAAAUACUCGAAUGCCAGAAUGCAAAA-------UCCGAAAUGCAAAAAUUAUCCAAAAAUGCAAAUUUG-CGAGUGCGAAA----- (((((..((----------....))...(((((((..(((..(((......)))...-------..)))..((((...............)))).)))))-)).)))))...----- ( -17.16) >DroEre_CAF1 126846 101 + 1 CGCACGCGA----------ACAUUCAAAUGCAAAUACUCGAAUGCCAGAAUGCAAAAUGCGAAAUGCGAAAUGCAAAAAUUAUCCAAAAAUGCAAAUUUG-CGAGUGCGAAA----- ((((((((.----------.(((((....(((..........)))..))))).....)))....((((((.((((...............))))..))))-)).)))))...----- ( -19.76) >DroYak_CAF1 124665 87 + 1 CGCACGCGA----------ACAUUCAAAUGCAAAUACUCGAAUGCCAGAAUGCAAAA------CUUCGAAAUGCAAAAAUUAUCCAAAAAUG---------CGAGUGCGAAA----- (((((((((----------....))...((((.....((((((((......)))...------.)))))..))))................)---------)..)))))...----- ( -15.50) >DroAna_CAF1 122509 104 + 1 CGCACGCGAGCAACAUGCAACAUUCAAAUGCAAAUA-----AUGCCCGAAUGCAAAA-------UGCGAAAUGCGA-AAUUAUCCAAAAAUGCAAAUAUGUCGAGUGCGAAAAUUUU (((((.(((.((...((((.(((((....(((....-----.)))..))))).....-------(((.....))).-.............))))....))))).)))))........ ( -21.60) >consensus CGCACGCGA__________ACAUUCAAAUGCAAAUACUCGAAUGCCAGAAUGCAAAA_______UCCGAAAUGCAAAAAUUAUCCAAAAAUGCAAAUUUG_CGAGUGCGAAA_____ (((((.((............(((((....(((..........)))..)))))...................((((...............)))).......)).)))))........ (-13.98 = -14.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:20 2006