Locus 3485

Sequence ID 3L_DroMel_CAF1
Location 10,234,986 – 10,235,076
Length 90
Max. P 0.919513
window5443

overview

Window 3

Location 10,234,986 – 10,235,076
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 96.35
Mean single sequence MFE -25.75
Consensus MFE -23.46
Energy contribution -23.35
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.91
SVM decision value 1.13
SVM RNA-class probability 0.919513
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10234986 90 + 23771897
UGGCCAUAGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCCGCAUUUGGCCCGCAGUUUCUGCUG----GCCGUAAUUAUGCAGACACCUUGC
.(((((..((..((((.((((((((((......))))).((((....))))))))).)))).))))----)))........((((.....)))) ( -26.60)
>DroSec_CAF1 110898 90 + 1
UGGCCAUAGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCCGCAUUUGGCCCGCAGUUUCUGCUG----GCCGUAAUUAUGCAGACACCUUGC
.(((((..((..((((.((((((((((......))))).((((....))))))))).)))).))))----)))........((((.....)))) ( -26.60)
>DroSim_CAF1 116220 90 + 1
UGGCCAUAGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCCGCAUUUGGCCCGCAGUUUCUGCUG----GCCGUAAUUAUGCAGACACCUUGC
.(((((..((..((((.((((((((((......))))).((((....))))))))).)))).))))----)))........((((.....)))) ( -26.60)
>DroEre_CAF1 119210 90 + 1
UGGCCAUAGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCCGCAUUUGGCCCGCAGUUUCUGCUG----GCCGUAAUUAUGCAGACACCUUGC
.(((((..((..((((.((((((((((......))))).((((....))))))))).)))).))))----)))........((((.....)))) ( -26.60)
>DroYak_CAF1 117053 90 + 1
UGGCCAUAGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCCGCAUUUGGCCCGCAGUUUCUGCUG----GCCGUAAUUAUGCAGACACCUUGC
.(((((..((..((((.((((((((((......))))).((((....))))))))).)))).))))----)))........((((.....)))) ( -26.60)
>DroAna_CAF1 114355 94 + 1
UGGCCAUCGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCUGAGUUUGGCCCGCAGUUUCUGUUGCCUUGCCGCAAUUAUGCAGACACCUUGC
.((((.((((.(....).))))..........((((((....)))))))))).(((((.((((((((......))).....))))).))..))) ( -21.50)
>consensus
UGGCCAUAGCCCGAAAGUGUGGAAAUUAUAAUAAAUUUAGCCGCAUUUGGCCCGCAGUUUCUGCUG____GCCGUAAUUAUGCAGACACCUUGC
.(((..((((..((((.((((((((((......))))).((((....))))))))).)))).))))....)))........((((.....)))) (-23.46 = -23.35 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:17 2006