Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,227,015 – 10,227,135 |
Length | 120 |
Max. P | 0.848959 |
Location | 10,227,015 – 10,227,135 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -23.00 |
Energy contribution | -23.12 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -1.65 |
Structure conservation index | 0.85 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10227015 120 + 23771897 GGAGUCAACUGCAGGGCACAAUUAAAUUGGCAAAUCCCUCCGACAGUCUGACAAACUGACAAUGCAAAUUAGCACUUAUGCCAUUGAUUAUUGCCAAUUGCCAAUCGAUUCGCACACAAA .(((((....(((.((((.((((((..(((((...........((((.......))))....(((......)))....)))))))))))..))))...))).....)))))......... ( -26.40) >DroSec_CAF1 102904 120 + 1 AGAGUCAACUGCAGGGCACAAUUAAAUUGGCAAAUCCCUCCGACAGGCUGGCAAACUGACAAUGCAAAUUAGCACUUAUGCCAUUGAUUAUUGCCAAUUGCCAAUCGAUUCGCACACAAA .(((((...(((...))).......((((((((...(((.....))).((((((..((((((((((.(........).)).))))).))))))))).)))))))).)))))......... ( -27.10) >DroSim_CAF1 108320 120 + 1 AGAGUCAACUGCAGGGCACAAUUAAAUUGGCAAAUCCCUCCGACAGGCUGGCAAACUGACAAUGCAAAUUAGCACUUAUGCCAUUGAUUAUUGCCAAUUGCCAAUCGAUUCGCACACAAA .(((((...(((...))).......((((((((...(((.....))).((((((..((((((((((.(........).)).))))).))))))))).)))))))).)))))......... ( -27.10) >DroEre_CAF1 109048 120 + 1 AGCGUUAACUGCAGGGCACAAUUAAAUUGGCAAAUCCCUCCGACAGGCUGACAAACUGACAAUGCAAAUUAGCACUUAUGCCAUUGAUUAUUGCCAAUUGCCAAUCGAUGCGCACACAAA .((((.....(((.((((.((((((..(((((...........(((.........)))....(((......)))....)))))))))))..))))...)))........))))....... ( -26.22) >DroYak_CAF1 108808 120 + 1 AGAGUCAAUGGCAGGGCACAAUUAAAUUGGCAAAUCCCUCCGACGGGCUGACAAACUGACAAUGCAAAUUAGCACUUAUGCCAUUGAUUAUUGCCAAUUGCCAAUCGAUUCGCACACAAA .(((((..(((((.((((.((((((..(((((...(((......)))...............(((......)))....)))))))))))..))))...)))))...)))))......... ( -32.70) >DroAna_CAF1 107030 119 + 1 AGAGUCAAUUGCAGAAAACAAUUAAAAUGGCAA-GCCCUCCGCCAGGCUGACAAACUGACAAUGCAAAUUAGCACUUAUCCCAUUGAUUAUUGCCAAUUGCCAAUCGAUUCGCACACACA .(((((.(((((((....((((...(((((..(-(((........)))).............(((......)))......)))))....))))....))).)))).)))))......... ( -22.90) >consensus AGAGUCAACUGCAGGGCACAAUUAAAUUGGCAAAUCCCUCCGACAGGCUGACAAACUGACAAUGCAAAUUAGCACUUAUGCCAUUGAUUAUUGCCAAUUGCCAAUCGAUUCGCACACAAA .(((((....(((.((((.((((((..(((((...........(((.........)))....(((......)))....)))))))))))..))))...))).....)))))......... (-23.00 = -23.12 + 0.11)
Location | 10,227,015 – 10,227,135 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -34.38 |
Consensus MFE | -31.17 |
Energy contribution | -31.75 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.07 |
Mean z-score | -1.36 |
Structure conservation index | 0.91 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10227015 120 - 23771897 UUUGUGUGCGAAUCGAUUGGCAAUUGGCAAUAAUCAAUGGCAUAAGUGCUAAUUUGCAUUGUCAGUUUGUCAGACUGUCGGAGGGAUUUGCCAAUUUAAUUGUGCCCUGCAGUUGACUCC ....((.(((((((..(((((((((((((((......(((((....)))))......)))))))).))))))).((......)))))))))))..((((((((.....)))))))).... ( -32.30) >DroSec_CAF1 102904 120 - 1 UUUGUGUGCGAAUCGAUUGGCAAUUGGCAAUAAUCAAUGGCAUAAGUGCUAAUUUGCAUUGUCAGUUUGCCAGCCUGUCGGAGGGAUUUGCCAAUUUAAUUGUGCCCUGCAGUUGACUCU ....((.(((((((..(((((((((((((((......(((((....)))))......)))))))).)))))))(((.....))))))))))))..((((((((.....)))))))).... ( -37.40) >DroSim_CAF1 108320 120 - 1 UUUGUGUGCGAAUCGAUUGGCAAUUGGCAAUAAUCAAUGGCAUAAGUGCUAAUUUGCAUUGUCAGUUUGCCAGCCUGUCGGAGGGAUUUGCCAAUUUAAUUGUGCCCUGCAGUUGACUCU ....((.(((((((..(((((((((((((((......(((((....)))))......)))))))).)))))))(((.....))))))))))))..((((((((.....)))))))).... ( -37.40) >DroEre_CAF1 109048 120 - 1 UUUGUGUGCGCAUCGAUUGGCAAUUGGCAAUAAUCAAUGGCAUAAGUGCUAAUUUGCAUUGUCAGUUUGUCAGCCUGUCGGAGGGAUUUGCCAAUUUAAUUGUGCCCUGCAGUUAACGCU .(((((.(((((..((((((((((((((((.......(((((...((((......)))))))))..)))))))(((......)))..)))))))))....))))).).))))........ ( -34.20) >DroYak_CAF1 108808 120 - 1 UUUGUGUGCGAAUCGAUUGGCAAUUGGCAAUAAUCAAUGGCAUAAGUGCUAAUUUGCAUUGUCAGUUUGUCAGCCCGUCGGAGGGAUUUGCCAAUUUAAUUGUGCCCUGCCAUUGACUCU .....(..(((.(.((((((((((((((((.......(((((...((((......)))))))))..)))))))(((......)))..))))))))).).)))..)............... ( -33.50) >DroAna_CAF1 107030 119 - 1 UGUGUGUGCGAAUCGAUUGGCAAUUGGCAAUAAUCAAUGGGAUAAGUGCUAAUUUGCAUUGUCAGUUUGUCAGCCUGGCGGAGGGC-UUGCCAUUUUAAUUGUUUUCUGCAAUUGACUCU .(((.((((((((.(((..((((((((((...(((.....)))...)))))).))))...))).)))))).(((((......))))-).))))).((((((((.....)))))))).... ( -31.50) >consensus UUUGUGUGCGAAUCGAUUGGCAAUUGGCAAUAAUCAAUGGCAUAAGUGCUAAUUUGCAUUGUCAGUUUGUCAGCCUGUCGGAGGGAUUUGCCAAUUUAAUUGUGCCCUGCAGUUGACUCU ....((.(((((((..(((((((((((((((......(((((....)))))......)))))))).)))))))(((.....))))))))))))..((((((((.....)))))))).... (-31.17 = -31.75 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:09 2006