Locus 3478

Sequence ID 3L_DroMel_CAF1
Location 10,223,198 – 10,223,296
Length 98
Max. P 0.783815
window5431

overview

Window 1

Location 10,223,198 – 10,223,296
Length 98
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 94.76
Mean single sequence MFE -24.82
Consensus MFE -21.96
Energy contribution -21.92
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.34
Structure conservation index 0.88
SVM decision value 0.57
SVM RNA-class probability 0.783815
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10223198 98 - 23771897
UGUUAUGACCGCAAAAUCAGCUUAAAGUUGUAUAGUCCGAUGGAGCUGAAAAGCCAG-------UGAGCUAGGUAGGAAAAGGCAAGUGGAAAAGGUAAGGGCUU
.(((...(((......(((((((...((((.......)))).)))))))....(((.-------(..(((...........))).).)))....)))...))).. ( -21.80)
>DroSec_CAF1 99391 105 - 1
UGUUAUGACCGCAAAAUCAGCUUAAAGUUGUAUAGUCCGAUGGAGCUGAAAAGCCAGCGAACUGUGAGCUAGGUAGGAAAAGGCAAGUGGAAAAGGUAAGGGCUU
........((((....(((((((...((((.......)))).)))))))...((((((.........))).)))............))))............... ( -23.30)
>DroSim_CAF1 104726 105 - 1
UGUUAUGACCGCAAAAUCAGCUUAAAGUUGUAUAGUCCGAUGGAGCUGAAAAGCCAGCGAACUGUGAGCUAGGUAGGAAAAGGCAAGUGGAAAAGGUAAGGGCUU
........((((....(((((((...((((.......)))).)))))))...((((((.........))).)))............))))............... ( -23.30)
>DroEre_CAF1 105097 105 - 1
UGUUAUGACCGCAAAAUCAGCUUAAAGUUGUAUAGUCCGAUGGAGCUGAAAAGCCAGCGGACUGUGAGCUAGGUAGGAAAAGGCCAGUGAAAGAGGUAAGAGCUU
.(((...(((((.....((((.....))))(((((((((...(.(((....))))..))))))))).))..(((........))).........)))...))).. ( -31.30)
>DroYak_CAF1 104748 105 - 1
UGUUAUGACCGCAAAAUCAGCUUAAAGUUGUAUAGUCCGAUGGAGCUGAAAAGCCAGCGAACUGUGAGCUAGGUAGCAAAAGGCAAGUGGAAGAGGUAAGAGCUU
........((((...(((((((((.((((......(((...)))((((......)))).)))).)))))).))).((.....))..))))............... ( -24.40)
>consensus
UGUUAUGACCGCAAAAUCAGCUUAAAGUUGUAUAGUCCGAUGGAGCUGAAAAGCCAGCGAACUGUGAGCUAGGUAGGAAAAGGCAAGUGGAAAAGGUAAGGGCUU
.(((...(((......(((((((...((((.......)))).)))))))...((((((.........))).)))....................)))...))).. (-21.96 = -21.92 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:06 2006