Locus 3477

Sequence ID 3L_DroMel_CAF1
Location 10,222,388 – 10,222,485
Length 97
Max. P 0.636310
window5430

overview

Window 0

Location 10,222,388 – 10,222,485
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 98.56
Mean single sequence MFE -24.06
Consensus MFE -21.94
Energy contribution -22.14
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.91
SVM decision value 0.21
SVM RNA-class probability 0.636310
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10222388 97 - 23771897
AUAAUAGCGACGCGAACAAUUUGCAGACGACAACACGCCGCAAAACCGAGAAGACAAACUUGGAGCUCCUUGGCCUUU-UUUCCUGGCUAAAAUAAGA
.....(((...........(((((.(.((......))).))))).(((((........))))).)))..((((((...-......))))))....... ( -19.70)
>DroSec_CAF1 98538 97 - 1
AUAAUAGCGACGCGAACAAUUUGCAGACGACAACACGCCGCAAAACCGAGGAGACAAACUUGGAGCUCCUUGGCCUUU-UUUCCUGGCUAAAAUAAGA
....((((.(.(.(((...(((((.(.((......))).))))).((((((((.((....))...)))))))).....-.))))).))))........ ( -23.40)
>DroSim_CAF1 103892 97 - 1
AUAAUAGCGACGCGAACAAUUUGCAGACGACAACACGCCGCAAAACCGAGGAGACAAACUUGGAGCUCCUUGGCCUUU-UUUCCUGGCUAAAAUAAGA
....((((.(.(.(((...(((((.(.((......))).))))).((((((((.((....))...)))))))).....-.))))).))))........ ( -23.40)
>DroEre_CAF1 104273 98 - 1
AUAAUAGCGACGCGAACAAUUUGCAGACGACAACACGCCGCAAAGCCGAGGAGACAAACUUGGAGCUCCUUGGCCUUUUUUUCCUGGCUAAAAUAAGA
....((((.(.(.(((...(((((.(.((......))).)))))(((((((((.((....))...)))))))))......))))).))))........ ( -26.90)
>DroYak_CAF1 103935 97 - 1
AUAAUAGCGACGCGAACAAUUUGCAGACGACAACACGCCGCAAAGCCGAGGAGACAAACUUGGAGCUCCUUGGCCUUU-UUUCCUGGCUAAAAUAAGA
....((((.(.(.(((...(((((.(.((......))).)))))(((((((((.((....))...)))))))))....-.))))).))))........ ( -26.90)
>consensus
AUAAUAGCGACGCGAACAAUUUGCAGACGACAACACGCCGCAAAACCGAGGAGACAAACUUGGAGCUCCUUGGCCUUU_UUUCCUGGCUAAAAUAAGA
....((((.(.(.(((...(((((.(.((......))).))))).((((((((.((....))...)))))))).......))))).))))........ (-21.94 = -22.14 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:05 2006