Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,207,359 – 10,207,454 |
Length | 95 |
Max. P | 0.999547 |
Location | 10,207,359 – 10,207,454 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 73.02 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -6.14 |
Energy contribution | -6.72 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.18 |
Mean z-score | -3.11 |
Structure conservation index | 0.25 |
SVM decision value | 3.71 |
SVM RNA-class probability | 0.999547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10207359 95 + 23771897 AAUUGAUGAUCAGAGGAGAGGUGCAUUUAUCUCUGGAGUGAAACUCUAAUGAAA-----AGAACAUGCAGUUAUCCUUCGUAUUAAUGUUAAAAAUCAAA .(((((((....(((((.((.(((((((.((..(((((.....)))))..)).)-----)....))))).)).)))))..)))))))............. ( -20.60) >DroSec_CAF1 83624 80 + 1 AAUUGAUGAGCA-AGGAAAGCUGCACUUUU-UCUGGAGUGAAACUCGAAUGAAA-----AGGACCUGUAGUUAUCCUUCGUAUUAAA------------- ..((((((.(.(-((((.((((((((((((-(((.(((.....))).)..))))-----)))...))))))).)))))).)))))).------------- ( -23.80) >DroSim_CAF1 87982 94 + 1 AAUUGAUGAGCA-AGGAGAGCUGCACUUUUCUCUGGAGUGAAACUCUAAUGAAA-----AGGACUUGCAGUUAUCCUUCGUAUUAAUGUUAAAAAUCAAA .(((((((.(.(-((((.(((((((((((((..(((((.....)))))..))))-----))....))))))).)))))).)))))))............. ( -30.20) >DroEre_CAF1 88785 98 + 1 AAUUGAUGCGCA-CAGAGAGGUGCAUUUUUCUCUGUAGUGCAAGUCAAAUGAAAAUCCAAGGACUUGCAGUUAUCCUUCAUAUUGGAGUAAA-AGUCAAA ..(((((..(((-((((((((......)))))))))..((((((((...((......))..))))))))....(((........)))))...-.))))). ( -28.80) >DroYak_CAF1 87918 76 + 1 AAUUGAUGCGCA-AGGAGAGGUGCACUUUUCUCUGGAGUGAAAA---------------------UGCAGUUAUCCUUCGUUAUAAAGUAAA-AUAUAA- .......(((.(-((((.((.((((.(((((........)))))---------------------)))).)).))))))))...........-......- ( -17.70) >consensus AAUUGAUGAGCA_AGGAGAGGUGCACUUUUCUCUGGAGUGAAACUCUAAUGAAA_____AGGACUUGCAGUUAUCCUUCGUAUUAAAGUAAA_AAUCAAA ..((((((.....((((.((.((((((((.....))))).....((....))..............))).)).))))...)))))).............. ( -6.14 = -6.72 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:57 2006