Locus 3470

Sequence ID 3L_DroMel_CAF1
Location 10,203,590 – 10,203,696
Length 106
Max. P 0.928304
window5418

overview

Window 8

Location 10,203,590 – 10,203,696
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 69.39
Mean single sequence MFE -19.11
Consensus MFE -11.88
Energy contribution -14.01
Covariance contribution 2.12
Combinations/Pair 1.26
Mean z-score -1.63
Structure conservation index 0.62
SVM decision value 1.19
SVM RNA-class probability 0.928304
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10203590 106 + 23771897
AUACAUUCCGAAUUUAGUACGUUUAAGUGCAUCUAAAAUCAUCGAAAAACAAUCUAAAAUCUAAAAUGUUUUUCCCAGUGUAACCCAAAAGGGUUAAGGCCCACUC
.((((((..((.((((((((......))))...)))).))...((((((((...............))))))))..))))))........((((....)))).... ( -18.86)
>DroSec_CAF1 79850 90 + 1
AUGCAUUCAUAAUUGUGUACGUUAAAGUGCAUCUA----------------AUCUAGUAUUGUGAUUGUUUUUCUCAGUGUAACCCAUAAGGGUUAGGGCCCACUC
..(((.(((((((.((((((......))))))...----------------.......))))))).))).......((((((((((....)))))).....)))). ( -20.50)
>DroSim_CAF1 84226 90 + 1
AUACAGUCAUAAUUGUGUACGUUAAAGUGCAUCUA----------------AUCUAGUAUUGUGAUUGUUUUUCUCAGUGUAACCCAAAAGGGUUAAGGCCCACUC
..(((((((((((.((((((......))))))...----------------.......))))))))))).......((((((((((....)))))).....)))). ( -23.40)
>DroYak_CAF1 84268 80 + 1
ACACAUUUAUA---UAGU-------AAUAAAAUCA----------------AGAUAGGACUAUGAUAGUUUUUUCCAGUGUAACCCAACCGGGUUAAGGCCCACUC
.(((.(((((.---....-------.)))))....----------------.((.(((((((...))))))).))..)))((((((....)))))).......... ( -13.70)
>consensus
AUACAUUCAUAAUUGAGUACGUUAAAGUGCAUCUA________________AUCUAGUAUUGUGAUUGUUUUUCCCAGUGUAACCCAAAAGGGUUAAGGCCCACUC
..(((((((((((.((((((......))))))..........................))))))))))).......((((((((((....)))))).....)))). (-11.88 = -14.01 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:54 2006