Locus 347

Sequence ID 3L_DroMel_CAF1
Location 1,004,913 – 1,005,003
Length 90
Max. P 0.546961
window514

overview

Window 4

Location 1,004,913 – 1,005,003
Length 90
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 82.27
Mean single sequence MFE -23.40
Consensus MFE -12.75
Energy contribution -12.88
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -2.22
Structure conservation index 0.54
SVM decision value 0.03
SVM RNA-class probability 0.546961
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1004913 90 - 23771897
ACAUCCUGGCUG---G--UAUCCUCGCUGGU---GCUUCUACUUCCAUUUCCAUAAUGAACCCAACCCCUUGCCAAAGGACAGUUUGUCCUAAUCUAA
......((((.(---(--((((......)))---)))........((((.....)))).............)))).(((((.....)))))....... ( -16.90)
>DroSec_CAF1 23125 90 - 1
ACAUCCUGGCUG---G--UAUCCUCGCUGGU---ACUCUUACUUCCAUUUCCAUAAUGGACCCAACCCCUUGGCAAAGGCCAGUUUGGCCUAAUCUAA
.((..(((((((---(--((((......)))---)))......((((((.....)))))).((((....))))....))))))..))........... ( -23.10)
>DroSim_CAF1 23325 84 - 1
ACAUCCUGGCUG---G--UAUCCUCGCUGGU---A------CUUCCAUUUCCAUAAUGGACCCAACCCCUUGGCAAAGGCCAGUUUGGCCUAAUCUAA
.((..(((((((---(--((((......)))---)------))((((((.....)))))).((((....))))....))))))..))........... ( -23.10)
>DroYak_CAF1 23740 98 - 1
ACUGCUAGGGUACGAGUAUGUCCUGGCUAGUUGUCCUGCUCCUUCCAUUUCCAUAAUGGACCCCACCCCUGGCCAAAGGCCAGUUUGGCCUAAUCUAA
...(((((((...(((((.(....(((.....)))))))))..((((((.....))))))......)))))))...(((((.....)))))....... ( -30.50)
>consensus
ACAUCCUGGCUG___G__UAUCCUCGCUGGU___ACU_CUACUUCCAUUUCCAUAAUGGACCCAACCCCUUGCCAAAGGCCAGUUUGGCCUAAUCUAA
........(((..........((.....)).............((((((.....))))))...........)))..(((((.....)))))....... (-12.75 = -12.88 +   0.12) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:44 2006