Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,004,913 – 1,005,003 |
Length | 90 |
Max. P | 0.546961 |
Location | 1,004,913 – 1,005,003 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 82.27 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -12.75 |
Energy contribution | -12.88 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.22 |
Structure conservation index | 0.54 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1004913 90 - 23771897 ACAUCCUGGCUG---G--UAUCCUCGCUGGU---GCUUCUACUUCCAUUUCCAUAAUGAACCCAACCCCUUGCCAAAGGACAGUUUGUCCUAAUCUAA ......((((.(---(--((((......)))---)))........((((.....)))).............)))).(((((.....)))))....... ( -16.90) >DroSec_CAF1 23125 90 - 1 ACAUCCUGGCUG---G--UAUCCUCGCUGGU---ACUCUUACUUCCAUUUCCAUAAUGGACCCAACCCCUUGGCAAAGGCCAGUUUGGCCUAAUCUAA .((..(((((((---(--((((......)))---)))......((((((.....)))))).((((....))))....))))))..))........... ( -23.10) >DroSim_CAF1 23325 84 - 1 ACAUCCUGGCUG---G--UAUCCUCGCUGGU---A------CUUCCAUUUCCAUAAUGGACCCAACCCCUUGGCAAAGGCCAGUUUGGCCUAAUCUAA .((..(((((((---(--((((......)))---)------))((((((.....)))))).((((....))))....))))))..))........... ( -23.10) >DroYak_CAF1 23740 98 - 1 ACUGCUAGGGUACGAGUAUGUCCUGGCUAGUUGUCCUGCUCCUUCCAUUUCCAUAAUGGACCCCACCCCUGGCCAAAGGCCAGUUUGGCCUAAUCUAA ...(((((((...(((((.(....(((.....)))))))))..((((((.....))))))......)))))))...(((((.....)))))....... ( -30.50) >consensus ACAUCCUGGCUG___G__UAUCCUCGCUGGU___ACU_CUACUUCCAUUUCCAUAAUGGACCCAACCCCUUGCCAAAGGCCAGUUUGGCCUAAUCUAA ........(((..........((.....)).............((((((.....))))))...........)))..(((((.....)))))....... (-12.75 = -12.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:44 2006