Locus 3469

Sequence ID 3L_DroMel_CAF1
Location 10,200,934 – 10,201,027
Length 93
Max. P 0.909478
window5417

overview

Window 7

Location 10,200,934 – 10,201,027
Length 93
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 76.43
Mean single sequence MFE -33.17
Consensus MFE -16.28
Energy contribution -17.37
Covariance contribution 1.09
Combinations/Pair 1.10
Mean z-score -2.24
Structure conservation index 0.49
SVM decision value 1.07
SVM RNA-class probability 0.909478
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10200934 93 + 23771897
AUUUGCGGUUGGCAACCGACC----AAAGGCACAAAAGCCGGGCUCAGCAGUGCAGCAGUUGUUGCCAGGCCAGCC-CC---CUUUUGUGCCACC------------AC--CACC
......((((((...))))))----...((((((((((..(((((..((...(((((....)))))...)).))))-).---))))))))))...------------..--.... ( -41.50)
>DroSec_CAF1 77203 93 + 1
AUUUGCGGUUGGCAACCGACC----AAAGGCACAAAAGCCGGGCUCAGCAGUGCAGCAAUUGUUGCCAGGCCAGCC-CC---CCUUUGUGCCACC------------UC--CACC
......((((((...))))))----...((((((((.(..(((((..((...(((((....)))))...)).))))-).---.)))))))))...------------..--.... ( -38.00)
>DroSim_CAF1 81559 92 + 1
AUUUGCGGUUGGCAACCGACC----AAAGGCACAAAAGCCGGGCUCAGCAGUGCAGCAAUUGUUGCCAGGCCAGCC-C----CCUUUGUGCCACC------------UC--CACC
......((((((...))))))----...((((((((....(((((..((...(((((....)))))...)).))))-)----..))))))))...------------..--.... ( -37.30)
>DroEre_CAF1 82263 88 + 1
AUUUGCGGUUGGCAACCGACC----AAAGGCACAAAAGCCUGGCUCAGCAGUGCAGCAAUUGUUGCUGGGGGAGAAGCCCACGCCC---------------------AC--CACC
......(((.(((..((((((----(..(((......)))))).))......(((((....))))).))(((.....)))..))).---------------------))--)... ( -30.40)
>DroYak_CAF1 81525 110 + 1
AUUUGCGGUUGGCAACCGACC----AAAGGCACAAAAGCCGGGCUCAGCAGUGCAGCAAUUGUUGCUGGGCCAGAC-CCCACCCCCUGUCACACCCCCCGAUUCUCCAUCACAUU
......((((((...))))))----...(((......)))(((....((((.(((((....)))))((((......-))))....))))....)))................... ( -30.30)
>DroAna_CAF1 77496 98 + 1
AUUUGCGGUUAGCAACCUACCCGGCAGAGGCACAAAAAGUAGGCUCA-CAGCGCCACAAUUGUUGCUAGGCCAUGC-CCCU-CCUUUGUUCCAAC------------UC--CCAC
.(((((((.(((....))).)).)))))((.(((((..(((((((..-.((((.((....)).)))).)))).)))-....-..))))).))...------------..--.... ( -21.50)
>consensus
AUUUGCGGUUGGCAACCGACC____AAAGGCACAAAAGCCGGGCUCAGCAGUGCAGCAAUUGUUGCCAGGCCAGCC_CC___CCUUUGUGCCACC____________AC__CACC
......((((((...)))))).......(((......))).(((((((((((......)))))))...))))........................................... (-16.28 = -17.37 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:53 2006