| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,168,419 – 10,168,510 |
| Length | 91 |
| Max. P | 0.535656 |
| Location | 10,168,419 – 10,168,510 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 84.54 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -14.76 |
| Energy contribution | -14.15 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10168419 91 + 23771897 UUUGCAGAUAGUUUGACUAGCACCAAACUCUCGAUAAUUCCAUCCCCUU-UUCGGGGAUGCAUAAACAUAU----GUACUUAACUCAGAUUUUGUU ..((((((.((((((........)))))).))........(((((((..-...)))))))..........)----))).................. ( -20.50) >DroPse_CAF1 56487 79 + 1 UUUGCAGAUAGUUUGACUAGCACCAAACUCUCAAUCA-----UCU-CCU-UUCGAGGAUGUGUUU-UUUCU----GUACUUAACUCAGUUU----- ..((((((.((((((........))))))......((-----(.(-(((-....)))).)))...-..)))----))).............----- ( -15.10) >DroSec_CAF1 45098 91 + 1 UUUGCAGAUAGUUUGACUAGCACCAAACUCUCGAUAAUUGCAACCCCUU-UUCGGGGAUGCGUAAACAUAU----GUACUUAACUCAGAUUUUGUU (((((.((.((((((........)))))).)).......(((.((((..-...)))).)))))))).....----..................... ( -21.20) >DroSim_CAF1 49110 92 + 1 UUUGCAGGUAGUUUGACUAGCACCAAACUCUCGAUAAUUGCAUCCCCUUUUUUGGGGUUGCGUAAACAUAU----GUACUUAACUCAGAUUUUGUU (((((.(..((((((........))))))..).......(((.((((......)))).)))))))).....----..................... ( -21.30) >DroEre_CAF1 48989 95 + 1 UUUGCAGAUAGUUUGACUAGCACCAAACUCUCGAUAAAUGCAUUCCCCUU-UCGGGGAUGCGUAAACAUAUGUAUGUACUUAACUCAGUUUUUGUU ..((((((.((((((........)))))).)).....((((((((((...-..)))))))))).......))))...................... ( -23.20) >DroYak_CAF1 48171 92 + 1 UUUGCAGAUAGUUUGACUAGCACCAAACUCUCGAUAAAUGCACUCCCCUUCUCGGGGUUGCGUAAACAUAU----GUACUUAACUCAGUUUUUGUU ..((((((.((((((........)))))).)).....(((((..((((.....)))).))))).......)----))).................. ( -20.90) >consensus UUUGCAGAUAGUUUGACUAGCACCAAACUCUCGAUAAUUGCAUCCCCCU_UUCGGGGAUGCGUAAACAUAU____GUACUUAACUCAGAUUUUGUU ..((((((.((((((........)))))).))...........((((......)))).)))).................................. (-14.76 = -14.15 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:36 2006