Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,163,603 – 10,163,694 |
Length | 91 |
Max. P | 0.604901 |
Location | 10,163,603 – 10,163,694 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.57 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -8.13 |
Energy contribution | -9.89 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.29 |
Mean z-score | -1.98 |
Structure conservation index | 0.33 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10163603 91 - 23771897 ----GGCCAGAGUUUUGCCAAAACAUUAAGCCCAGUGUAGUUGGCAAUUAUCUGUGAUCACCGGGAGGAA-------------------------AAUCAGGCACUGCAAAUGGCUAAAA ----.((((((...(((((((.(((((......)))))..)))))))...))).((((..((....))..-------------------------.)))))))...((.....))..... ( -24.80) >DroPse_CAF1 51429 120 - 1 UUUAGGAGAAGCCCUUGCUAACCCAUUAAACCCAAUUUAGUUGGCAAUUAUCCAAGAUCUGCUGGAGGGGCAUGCAACGUAAAAGGAAUCUCAGGAAUCUCGCUCAGAAAAUGACUAAAA (((((((((.((((((((((((.................)))))))....((((........))))))))).................((....)).))))..(((.....)))))))). ( -25.33) >DroSec_CAF1 40232 90 - 1 ----GGCCAGAGCUUUGCCA-AACAUUAAGCCCAGUUUAGUUGGCAAUUAUCCUUGAUCACCUGAUGGAA-------------------------AAUCAGGCAAUGAAAAUGGCUAAAA ----(((((((...((((((-...(((((((...)))))))))))))...)).....(((((((((....-------------------------.))))))...)))...))))).... ( -26.30) >DroSim_CAF1 44254 91 - 1 ----GGCCAGAGCUUUGCCAAAACAUUAAGCCCAGUUUAGUUGGCAAUUAUCCUUGAUCACCUGAUGGAA-------------------------AAUCAGGCAAUGAAAAUGGCUAAAA ----(((((((...((((((....(((((((...)))))))))))))...)).....(((((((((....-------------------------.))))))...)))...))))).... ( -25.90) >DroEre_CAF1 43946 81 - 1 ----GGCCAGA----------AACAGUAAAGGCAGCUUAGUUGGCAAUUAUCCUUGAUCACCUAGAGGAA-------------------------AAUCAGGCACUGUAAAUGGCUAAAA ----(((((..----------.(((((...(.((((...)))).).......((((((..((....))..-------------------------.)))))).)))))...))))).... ( -22.20) >DroAna_CAF1 39411 88 - 1 ----UGC-AGCCUUUUGCCGAACCAUUAAGCCCAGUUUGGUUGGCAAUUAUCCUAGAUCACCUGGAGGAA-------------------------AAUCAGGCACUG--AAUGGCUAAAA ----...-((((..(((((.(((((............))))))))))..........((((((((.....-------------------------..)))))...))--)..)))).... ( -21.40) >consensus ____GGCCAGAGCUUUGCCAAAACAUUAAGCCCAGUUUAGUUGGCAAUUAUCCUUGAUCACCUGGAGGAA_________________________AAUCAGGCACUGAAAAUGGCUAAAA ....(((((.....((((((....(((((((...)))))))))))))...(((.............)))..........................................))))).... ( -8.13 = -9.89 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:35 2006