Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,158,823 – 10,158,941 |
Length | 118 |
Max. P | 0.718015 |
Location | 10,158,823 – 10,158,941 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.97 |
Mean single sequence MFE | -30.76 |
Consensus MFE | -25.60 |
Energy contribution | -26.80 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.83 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10158823 118 + 23771897 UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCAAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUAC--CACAA .......((((((..(((.((((((((((...(.......(....)..........(((((((.....))))))).)..))))))))))))).))))))..............--..... ( -32.50) >DroSec_CAF1 35495 120 + 1 UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUACCCCACAA .......((((((..(((.((((((((((...........(....).......(((.((((((.....)))))))))..))))))))))))).))))))..................... ( -32.20) >DroSim_CAF1 39483 120 + 1 UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUACCCCACAA .......((((((..(((.((((((((((...........(....).......(((.((((((.....)))))))))..))))))))))))).))))))..................... ( -32.20) >DroEre_CAF1 36675 117 + 1 UUUUACGGGCUACAUGGCAGUUUGUGCGAGAACAAAGAAAGGAAACAAUAUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUGAUGGCCUUAAAAGUUGAUACC---CAA (((((.((((((.....((((((((((((...........(....).......(((.((((((.....)))))))))..)))))))..))))).))))))))))).........---... ( -27.80) >DroYak_CAF1 37240 117 + 1 UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGUGGAUGUCAGGGCAGGAUUGCACAUAAGCUGAUGGCCUUAAAAGUUGAUACC---CAA (((((..(((((...(((.((((((((.............(....).....((((.(((((...(....).))))).)))))))))))))))..))))).))))).........---... ( -29.10) >consensus UUUUAUUGGCUACAUGGCAUUAUGUGCGAGAACAAAGAAAGGAAACAAUUUAAUUGUGUUUGGGGAUGUCAGGCCAGGAUUGCACAUAAGCUCGUGGCCUCAAAAGUUGAUACC_CACAA .......((((((..(((.((((((((((...(.......(....)...........((((((.....))))))..)..))))))))))))).))))))..................... (-25.60 = -26.80 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:34 2006