| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,148,749 – 10,148,846 |
| Length | 97 |
| Max. P | 0.981518 |
| Location | 10,148,749 – 10,148,846 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 91.86 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -29.88 |
| Energy contribution | -30.12 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10148749 97 - 23771897 UACCCAAUGAAUACUCAUUUCAGAGGCGCCAGGGCAGAAUGCAAUGCCAAGUGAAUGUUUGGGUGUUCGGUGGGGUGAGUGAUUGCGGUGGGUGGGG ((((((.((..(((((((..((..((((((..((((...(((........)))..))))..)))).))..))..)))))))....)).))))))... ( -33.80) >DroSec_CAF1 25487 97 - 1 UGCCCAACGCCUACUCAUUUUAGAGACGCCAGGGCAGAAUGCAAUGCCAAGUGGAUGUUUGGGUGUUCGGUGGGUAGAGUGAUUGCGGUGGGUGGGG ..((((.((((((.((((((((....((((..((((........))))....(((..(....)..)))))))..)))))))).)).))))..)))). ( -33.10) >DroSim_CAF1 27118 97 - 1 UGCCCAACGCAUACUCAUUUCAGAGGCGCCAGGACAGAAUGCAAUGCCAAGUGGAUGUUUGGGUGUUCGGUGGGUGGAGUGAUUGCGGUGGGUGGGG .(((((.(((((((((..((((..((((((..((((...(((........)))..))))..)))).))..))))..)))))..)))).))))).... ( -33.90) >DroEre_CAF1 26583 96 - 1 UACCC-CUGAAUACCCAUUUCAGAGGCGCCAGGCCAGAAUGCAAUGCCAAGUGGAUGUUUGGGUGUUCGGUGGAGUGAGUGAUUGCGGUGGGUGGGC (((((-(((((((((((.((((..((((....((......))..))))...))))....)))))))))))....(..(....)..)...)))))... ( -33.00) >DroYak_CAF1 26937 97 - 1 UACCCAAUGAAUACUCAUUUCAGAGGCGCCAGGGCAGAAUGCAAUGCCAAGUGGAUGUUUGGGUGUUCGGUGGAGUGAGUGAUUGCGGUGGGUGGGU ((((((.((..(((((((((((..((((((..((((...(((........)))..))))..)))).))..)))))))))))....)).))))))... ( -34.80) >consensus UACCCAAUGAAUACUCAUUUCAGAGGCGCCAGGGCAGAAUGCAAUGCCAAGUGGAUGUUUGGGUGUUCGGUGGGGUGAGUGAUUGCGGUGGGUGGGG ((((((.((..(((((((((((..((((((..((((...(((........)))..))))..)))).))..)))))))))))....)).))))))... (-29.88 = -30.12 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:33 2006