Locus 3456

Sequence ID 3L_DroMel_CAF1
Location 10,146,233 – 10,146,333
Length 100
Max. P 0.781859
window5395

overview

Window 5

Location 10,146,233 – 10,146,333
Length 100
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 79.50
Mean single sequence MFE -16.70
Consensus MFE -9.20
Energy contribution -10.20
Covariance contribution 1.00
Combinations/Pair 1.17
Mean z-score -2.26
Structure conservation index 0.55
SVM decision value 0.56
SVM RNA-class probability 0.781859
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10146233 100 + 23771897
ACAACAACUAAGAUAUCUAUAUCUAAACAUAA-AAAUGAUGUAUUCGAUUAGGACGAAAGUAUUUCUCAAAGUGUAUGAAGGAUAUAGCCAAAAAGGCAAG
.................(((((((...((((.-....((.....))((..((.((....)).))..))......))))..)))))))(((.....)))... ( -14.70)
>DroSec_CAF1 23030 86 + 1
ACA--------------UAUAUCUAAGCUUAA-AAAUAAUGUAUUCGAUGAGGACGAAAGUAUUUCUCAGAGUGUAUAAAGGAUAUAGCCAAAAAGGCAAG
...--------------(((((((....(((.-...)))(((((.(..(((((((....))...)))))..).)))))..)))))))(((.....)))... ( -17.90)
>DroSim_CAF1 24625 86 + 1
ACA--------------UAUAUCGAAGCUUAU-AAAUUAUGUAUUCGAUGAAGACGAAAGUAUUUCUCAAAGUGUAUAAAGGAUAUAGCCAAAAAGGCAAG
...--------------(((((((((...(((-(...))))..)))((.((((((....)).)))))).............))))))(((.....)))... ( -15.90)
>DroYak_CAF1 24631 87 + 1
GUA--------------UAUAUCUAAAUCUAACAAAAACUGCGUUUGAUGAAGUAGAAAAUAUUUCUCAAAGUGUAAGAAGGAUAUAGCCAAAAAGGCAAG
...--------------(((((((...(((.(((.........(((((.((((((.....))))))))))).))).))).)))))))(((.....)))... ( -18.30)
>consensus
ACA______________UAUAUCUAAACUUAA_AAAUAAUGUAUUCGAUGAAGACGAAAGUAUUUCUCAAAGUGUAUAAAGGAUAUAGCCAAAAAGGCAAG
.................(((((((..............((((((((...((((((....)).))))...))))))))...)))))))(((.....)))... ( -9.20 = -10.20 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:32 2006