Locus 3455

Sequence ID 3L_DroMel_CAF1
Location 10,136,467 – 10,136,565
Length 98
Max. P 0.785235
window5394

overview

Window 4

Location 10,136,467 – 10,136,565
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 93.80
Mean single sequence MFE -18.72
Consensus MFE -17.22
Energy contribution -17.30
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -1.24
Structure conservation index 0.92
SVM decision value 0.57
SVM RNA-class probability 0.785235
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10136467 98 - 23771897
UUUAAUUUAUUUGCCAAUUUCAUUCGUUAUUUAUUCAGCUCAUUUGAGCAUACAAUUUGGUUCGCUUGUACAGUCAUU-UUAGCGACAGGUGAAUUAAU
.....................................((((....)))).......(((((((((((((...((....-...)).))))))))))))). ( -19.90)
>DroSec_CAF1 13197 98 - 1
UUUAAUUUAUUUGCCAAUUUCAUUCGUUAUUUAUUCAGCUCAUUUGAGCAUACAAUUUGGGUCGCUUGCACAGUCAUU-UCAGCGACACGUGGAUUAAU
.(((((((((...((((........(.........).((((....)))).......))))((((((............-..))))))..))))))))). ( -18.04)
>DroSim_CAF1 14737 98 - 1
UUUAAUUUAUUUGCCAAUUUCAUUCGUUAUUUAUUCAGCUCAUUUGAGCAUACAAUUUGGUUCGCUUGCACAGUCAUU-UCAGCGACAGGUGGAUUAAU
.((((((((((((........................((((....))))............(((((............-..))))))))))))))))). ( -17.94)
>DroEre_CAF1 14867 98 - 1
UUUAAUUUAUUUGCCAAUUUAGUUCGUUGUUUAUGCAGCUCAUUUGAGCAUACAAUUUGAUUCGCUUGUACAGUCAUU-UCAGCGACAGGUGAAUUAAU
.((((((((((((..........((((((...((((.((((....)))).(((((..........)))))..).))).-.)))))))))))))))))). ( -22.00)
>DroYak_CAF1 14636 99 - 1
UUUAAUUUAUUUGCCAAUUUCAUUCGUUGUUUAUUCAGCUCAUUUGAGCAUACAAUUUGCUUUGCUUGCACAGUCAUUUUUAGCGACAGGUGCAUUAAU
............((...........((((......))))......(((((.......))))).)).(((((.(((.........)))..)))))..... ( -15.70)
>consensus
UUUAAUUUAUUUGCCAAUUUCAUUCGUUAUUUAUUCAGCUCAUUUGAGCAUACAAUUUGGUUCGCUUGCACAGUCAUU_UCAGCGACAGGUGAAUUAAU
.((((((((((((........................((((....))))............(((((...............))))))))))))))))). (-17.22 = -17.30 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:31 2006