Locus 3454

Sequence ID 3L_DroMel_CAF1
Location 10,131,383 – 10,131,482
Length 99
Max. P 0.500000
window5393

overview

Window 3

Location 10,131,383 – 10,131,482
Length 99
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 93.38
Mean single sequence MFE -25.02
Consensus MFE -22.61
Energy contribution -22.17
Covariance contribution -0.44
Combinations/Pair 1.24
Mean z-score -1.06
Structure conservation index 0.90
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10131383 99 + 23771897
A--AACCGAAGCCGAGAAAGGAAAAUUCGAGGCUGCCUGUAAAGGAAAUGCCUUUGGUCGGAAAAUCCAUUCAAUGGCCAUCUGUAAUGGCAUCAGUCAAU
.--....((.((((.....(((......(((((..(((....)))....)))))(((((.(((......)))...))))))))....)))).))....... ( -25.00)
>DroSec_CAF1 8026 99 + 1
A--AACCGAAGCCGAGAAAGGAAAAUUCGAGGCUGCCUGUAAAGGAAAUGCCUUUGGUCGGAAAAUCCAUUCAAUGGCCAUCUGUAAUGGCAUCAGUCUAU
.--...((((.((......))....))))(((((((((....)))..(((((..(((((.(((......)))...)))))........))))))))))).. ( -25.70)
>DroSim_CAF1 9543 99 + 1
A--AACCGAAGCCGAGAAAGGAAAAUUCGAGGCUGCCUGUAAAGGAAAUGCCUUUGGUCGGAAAAUCCAUUCAAUGGCCAUCUGUAAUGGCAUCAGUCAAU
.--....((.((((.....(((......(((((..(((....)))....)))))(((((.(((......)))...))))))))....)))).))....... ( -25.00)
>DroEre_CAF1 9453 99 + 1
A--AACCGGAGCGGAGAAAGGAAAAUUCGAGGCUGCCUGUAAAGGAAAUGCCUUUGGUCGGAAAAUCCAUUCAAUGGCCAUCUGCAGUGGCAUCAGUCAAU
.--.......(((((.............(((((..(((....)))....)))))(((((.(((......)))...))))))))))..((((....)))).. ( -26.00)
>DroYak_CAF1 8268 99 + 1
A--AACCGAAGCUGAGAAAGGAAAAUUCGAGGCUGCCUGUAAAGGAAAUGCCUUUGGUCGGAAAAUCCAUUCAAUGGCCAUCUGUAAUGGCAUCAGUCAAU
.--.......((((((((.(((...((((((((..(((....)))....))).....)))))...))).)))....(((((.....))))).))))).... ( -27.40)
>DroAna_CAF1 7605 101 + 1
AAAAACCGAAGCCGGGGAAAGGAAAUUCAAGGCUGCCUGUGGAGGAAAUGCCCUUGGUUGGAAAAUGCAUUCAAUGGCCACCUGUAAUGCCAUCAGUCAAU
.......(((.((.......))...)))..(((((((..(.((((......)))).)..))............(((((..........))))))))))... ( -21.00)
>consensus
A__AACCGAAGCCGAGAAAGGAAAAUUCGAGGCUGCCUGUAAAGGAAAUGCCUUUGGUCGGAAAAUCCAUUCAAUGGCCAUCUGUAAUGGCAUCAGUCAAU
.......((.((((.....(((......(((((..(((....)))....)))))(((((.(((......)))...))))))))....)))).))....... (-22.61 = -22.17 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:30 2006