| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,126,074 – 10,126,182 |
| Length | 108 |
| Max. P | 0.558325 |
| Location | 10,126,074 – 10,126,182 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 81.90 |
| Mean single sequence MFE | -36.38 |
| Consensus MFE | -25.08 |
| Energy contribution | -25.58 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10126074 108 + 23771897 -GCUCCUUUU--AGAUGUUCGAUGAGAGCUGCCUGCGUUUUCAUGGCCUGGUGAACAUGGCCUAUUUCCGUGAGUAUUUGCUGGGUCUCCACAACGGAUAUCGCCAAGAGG -...((((((--.((((((((((((((((.......))))))))((((..(..(((((((.......)))))....))..)..)))).......))))))))...)))))) ( -37.00) >DroSec_CAF1 2710 108 + 1 -CCUAUUUCC--AGAUGUUCGUAGAGAGCUGCCUGCGUUUUCAUGGCCUGGUGAACAUGGCCUAUUUCCGUGAGUAUUUGCUAGGCCUUCACAACGGAUAUCGCCAGGAGG -.....((((--.(((((((((.((((((.......))))))..(((((((..(((((((.......)))))....))..)))))))......)))))))))....)))). ( -38.50) >DroSim_CAF1 4143 108 + 1 -CCUAUUUCC--AGAUGUUCGAAGAGAGCUGCCUGCGUUUUCAUGGCCUGGUGAACAUGGCCUAUUUCCGUGAGUAUUUGCUAGGCCUUCACAACGGAUAUCGCCAGGAGG -.....((((--.((((((((..((((((.......))))))..(((((((..(((((((.......)))))....))..))))))).......))))))))....)))). ( -37.40) >DroEre_CAF1 4121 108 + 1 -CCUUUUUCC--AGAUGUUCGAUGAGAGCUGCCUGCGUUUUCAUGGCCUGGUUAAUAUGGCAUAUUUUCGCGAGUAUCUGCUGGGCCUCCACAACGGAUAUCGCCAGGAGG -((((((...--.((((((((((((((((.......))))))))((((..((..((((.((........))..))))..))..)))).......))))))))...)))))) ( -38.20) >DroYak_CAF1 2790 108 + 1 -CCUCUUUGC--AGAUGUUCGAUGAGAGCUGCCUGCGUUUUCAUGGCCUGGUUAAUAUGGCAUAUUUCCGCGAGUAUCUGCUGGGUCUGCACAACGGCUAUCGGCAGGAGG -((((((.((--.((((..((((((((((.......))))))))((((..((..((((.((........))..))))..))..)))).......))..)))).)))))))) ( -37.50) >DroAna_CAF1 2449 111 + 1 AGGAACUUCCAUAGGUUUUCGACAAGAGGUGCUUGCGCUUCAACAGCCUGGUGAAUAUCGGAAAGUUUCGCCGCUAUUUGCUGGCCAUGCACAACAAAUACCGCGAGGAUG .((.....))....(((((((.(..((((((....))))))....(((.((..((((.(((.........))).))))..))))).................)))))))). ( -29.70) >consensus _CCUAUUUCC__AGAUGUUCGAUGAGAGCUGCCUGCGUUUUCAUGGCCUGGUGAACAUGGCAUAUUUCCGCGAGUAUUUGCUGGGCCUCCACAACGGAUAUCGCCAGGAGG .....(((((...((((((((..((((((.......))))))..(((((((((((..(.((........)).)...))))))))))).......))))))))....))))) (-25.08 = -25.58 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:29 2006