| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,125,309 – 10,125,403 |
| Length | 94 |
| Max. P | 0.815378 |
| Location | 10,125,309 – 10,125,403 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.90 |
| Mean single sequence MFE | -35.34 |
| Consensus MFE | -22.39 |
| Energy contribution | -22.31 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10125309 94 - 23771897 GCACGCCAGUUUUCCGCUCCCAG-------CACUCUGCU-------CCGGACUAUGGAAAUUGGCACAAAAG------CC-GAGCUGGACCGGAUUGGCCU---GGCCAGAAGUUGGG ....((((((((((...(((.((-------(.....)))-------..)))....)))))))))).......------((-((.((((.((((......))---))))))...)))). ( -33.30) >DroSec_CAF1 1983 94 - 1 GCACGCCAGUUUCCCGCUCCCAG-------CACUCUGCU-------CCGGACUAUGGAAAUUGGCACAAAAG------CC-AAGCUGGACCGGAUUGGCCU---GGCCAGAAGUUGGG ....((((((((((...(((.((-------(.....)))-------..)))....)))))))))).......------((-((.((((.((((......))---))))))...)))). ( -36.50) >DroSim_CAF1 3378 94 - 1 GCACGCCAGUUUCCCGCUCCCAG-------CACUCUGCU-------CCGGACUAUGGAAAUUGGCACAAAAG------CC-AAGCUGGACCGGAUUGGCCU---GGCCAGAAGUUGGG ....((((((((((...(((.((-------(.....)))-------..)))....)))))))))).......------((-((.((((.((((......))---))))))...)))). ( -36.50) >DroEre_CAF1 3341 80 - 1 GCACGCCAGUUUCC--------------------CUGCU-------CCGGACUAUGGAAAUUGGCACAAAG-------CC-GAGCUGGACCGGAUUGGCCU---GGCCAGAAGUUGGG ....((((((((((--------------------.((..-------......)).))))))))))......-------((-((.((((.((((......))---))))))...)))). ( -30.00) >DroYak_CAF1 1998 114 - 1 GCACGCCAGUUUUCCGCUCCCAGCUAACAGCUCUCUGCUCCGGAGUCCGGACUAUGGAAAUUGGCACAAAAGCUGGUCCC-GAGCUGGACCGGAUUGGCCU---GGCCAGAAGCUGGG ....((((((((((.((....(((.....)))....))(((((...)))))....)))))))))).(((...(((((((.-.....))))))).))).((.---.((.....))..)) ( -42.70) >DroAna_CAF1 1854 86 - 1 GCAGAGCA-UUUCCCACUACGGG-------C------------------CACUAUGGAAAUUUCCGACAAUG------CCAAAGCUGGACCGGACUGGCCAAAAGGCCAGUGAGUGGG ........-...((((((.(((.-------(------------------((((.(((...............------))).)).))).))).(((((((....))))))).)))))) ( -33.06) >consensus GCACGCCAGUUUCCCGCUCCCAG_______CACUCUGCU_______CCGGACUAUGGAAAUUGGCACAAAAG______CC_AAGCUGGACCGGAUUGGCCU___GGCCAGAAGUUGGG ....((((((((((.........................................))))))))))........................((((.((((((....))))))...)))). (-22.39 = -22.31 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:27 2006