Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,120,095 – 10,120,193 |
Length | 98 |
Max. P | 0.594938 |
Location | 10,120,095 – 10,120,193 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.84 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -18.65 |
Energy contribution | -18.07 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.29 |
Mean z-score | -2.41 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10120095 98 - 23771897 --------------------GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGCGCCGCCUAA --------------------((...(((....((((..(((((((((.......((....))(((((........))))).....))))))))).))))((......))))).))... ( -29.00) >DroSec_CAF1 58993 98 - 1 --------------------GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGUGCCGCCUAA --------------------....((((....((((..(((((((((.......((....))(((((........))))).....))))))))).))))((((....)))).)))).. ( -29.10) >DroEre_CAF1 65419 98 - 1 --------------------GGAAAGGCAAUCGACAAAGGAGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGAGCCGCCUAA --------------------((...(((((((((((.(((.((((((.......((....))(((((........))))).....))))))))).))))).))).....))).))... ( -24.30) >DroWil_CAF1 167399 118 - 1 GGCUGGCUGGCUGAUUGUCUGUCUUGGCAAUCGACAAAAGGCAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAAAGUAAUUUUCUUUGUGUCGCAUUUUUUCCGCGCCUAA ((((((...((.(((((((......)))))))((((.((((.(((((.......((....))(((((........))))).....))))))))).)))))).......))).)))... ( -28.60) >DroYak_CAF1 61952 98 - 1 --------------------GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCUCUGUGUCGCAUUCCAGCGCCGCCUAA --------------------((...(((....((((..(((((((((.......((....))(((((........))))).....))))))))).))))((......))))).))... ( -26.00) >DroAna_CAF1 57490 98 - 1 --------------------AGAACGGCAAUCGUCGCCGGAGAAUAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCUUUGUGUCGCAUUCCAGUGCCGCCUAA --------------------.....(((....(.(((.(((((((.........((....))(((((........))))).....)))))))..))).)((((....)))).)))... ( -19.60) >consensus ____________________GGAAAGGCAAUCGACAAAAGGGAAAAUAAAUUAUCAUCAUUGUGACAUUUUCAUUUGUCAACGUAAUUUUCCCUGUGUCGCAUUCCAGCGCCGCCUAA ....................((...((.((((((((..(((((((((.......((....))(((((........))))).....))))))))).))))).)))))....))...... (-18.65 = -18.07 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:26 2006