Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,113,797 – 10,113,902 |
Length | 105 |
Max. P | 0.934950 |
Location | 10,113,797 – 10,113,902 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.63 |
Mean single sequence MFE | -27.73 |
Consensus MFE | -21.33 |
Energy contribution | -21.59 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.77 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10113797 105 + 23771897 UAUUUAAGGGGAUUUAACCAGCAAAAUCCUUGAAAAUACCCUAGCUAUUUUCUCCCCUUUCAAUUUGCGUUAAGUGCUGCUGCUGCUGCCGGGCCAGCAGCCAAG .....(((((((...................(((((((.......))))))))))))))..............(.(((((((..(((....)))))))))))... ( -24.80) >DroSec_CAF1 52755 105 + 1 UAUUUAAGGGGAUUUCACCAGCACAAUCCUUAAAAAUAUCCUAGCUUUUUUCUCCCCUUUCAAUUUGCGUUAAGUGCUGCUGCUGCUGCCGGGCCAGCAGCCAAA .....(((((((.......(((.....................)))......)))))))..............(.(((((((..(((....)))))))))))... ( -24.12) >DroSim_CAF1 53787 105 + 1 UAUUGAAGGGGAUUUAACCAGCACAAUCCUUGAAAAUAUCCUAGCUAUUUUCGCCCCUUUCAAUUUGCGUUAAGUGCUGCUGCUGCUGCCGGGCCAGCAGCCAAG .((((((((((........((.......)).(((((((.......)))))))..)))))))))).........(.(((((((..(((....)))))))))))... ( -27.70) >DroEre_CAF1 57385 102 + 1 UAUUUAAGGGGAUUUAACCAGCGAAAUCCCUGAAAAUAGCCCGGCUAUUUUCACCCCUUUCAAUUUGCGCUAAGUGCUGCU---GCUGCUGGGCCAGCAGCAAAG .......((((((((........))))))))(((((((((...)))))))))..............((((...))))((((---((((......))))))))... ( -34.30) >consensus UAUUUAAGGGGAUUUAACCAGCAAAAUCCUUGAAAAUAUCCUAGCUAUUUUCUCCCCUUUCAAUUUGCGUUAAGUGCUGCUGCUGCUGCCGGGCCAGCAGCCAAG .....((((((........(((.....................))).......))))))................(((((((..(((....)))))))))).... (-21.33 = -21.59 + 0.25)
Location | 10,113,797 – 10,113,902 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.63 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -27.55 |
Energy contribution | -29.05 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.11 |
Mean z-score | -2.19 |
Structure conservation index | 0.84 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10113797 105 - 23771897 CUUGGCUGCUGGCCCGGCAGCAGCAGCAGCACUUAACGCAAAUUGAAAGGGGAGAAAAUAGCUAGGGUAUUUUCAAGGAUUUUGCUGGUUAAAUCCCCUUAAAUA ....(((((((......)))))))....((.......)).......(((((((.....(((((((.(.((((....))))..).)))))))..)))))))..... ( -31.40) >DroSec_CAF1 52755 105 - 1 UUUGGCUGCUGGCCCGGCAGCAGCAGCAGCACUUAACGCAAAUUGAAAGGGGAGAAAAAAGCUAGGAUAUUUUUAAGGAUUGUGCUGGUGAAAUCCCCUUAAAUA ....(((((((......)))))))....((.......)).......(((((((.......(((((.(((.((.....)).))).)))))....)))))))..... ( -32.50) >DroSim_CAF1 53787 105 - 1 CUUGGCUGCUGGCCCGGCAGCAGCAGCAGCACUUAACGCAAAUUGAAAGGGGCGAAAAUAGCUAGGAUAUUUUCAAGGAUUGUGCUGGUUAAAUCCCCUUCAAUA ....(((((((......)))))))....((.......))..((((((.((((......(((((((.(((.((.....)).))).)))))))...)))))))))). ( -33.40) >DroEre_CAF1 57385 102 - 1 CUUUGCUGCUGGCCCAGCAGC---AGCAGCACUUAGCGCAAAUUGAAAGGGGUGAAAAUAGCCGGGCUAUUUUCAGGGAUUUCGCUGGUUAAAUCCCCUUAAAUA ...((((((((...)))))))---)((.((.....)))).......((((((.(((((((((...)))))))))((.(....).))........))))))..... ( -34.60) >consensus CUUGGCUGCUGGCCCGGCAGCAGCAGCAGCACUUAACGCAAAUUGAAAGGGGAGAAAAUAGCUAGGAUAUUUUCAAGGAUUGUGCUGGUUAAAUCCCCUUAAAUA ....(((((((((......))..)))))))................(((((((.....(((((((.(((.((.....)).))).)))))))..)))))))..... (-27.55 = -29.05 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:25 2006