| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 999,200 – 999,320 |
| Length | 120 |
| Max. P | 0.996367 |
| Location | 999,200 – 999,320 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.83 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -20.66 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.92 |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.996367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 999200 120 + 23771897 UUUUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUACCAAUUUAUUACACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACGGAUUUUGUUUGUCCU ................((..........((((...((((.(((((((((.....)))....))))))..)))).))))....(((((((....)))))))))..((((.......)))). ( -20.60) >DroSec_CAF1 17437 120 + 1 UCCUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGGUCUGCCAAUUUAUUACACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACGGAUUUUGUUUGCCCU .............(((((..(((.....((((...((((.((((((..((....)).....))))))..)))).))))...((((((((....))))))))...)))....))))).... ( -21.30) >DroSim_CAF1 17650 120 + 1 UUUUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUGCCAAUUUAUUGCACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACGGAUUUUGUUUGCCUU .............(((((..(((.....((((...((((.((((((((((...)))))))....)))..)))).))))...((((((((....))))))))...)))....))))).... ( -22.70) >DroEre_CAF1 16945 119 + 1 UUUUUGCAUCCUUUAAGCUGUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUGCCAAUUUAUUACACUUUUAUUCAAUAUUCAUAGAUUUAUAUCUGUGGCACGGAUUUUGUUUGUGC- .....((((.....((((.((((.....((((.(..((((.(((((((((...))))....)))))))))..).))))...((((((((....))))))))...))))...))))))))- ( -25.60) >DroYak_CAF1 18022 120 + 1 UUUUUGAAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUUUGCCAAUUUAUUACAUUUCUAUUCAAUAUUCAUAGAUUUAUAUCCGUGGCACGGAUUUUGUUUGUCCU .....((((...(((((.....))))).((((...((((.((((((((((...))))....))))))..)))).)))).))))((((((....(((((.....)))))...))))))... ( -21.70) >consensus UUUUUACAUCCUUUAAGCUCUCCUUAAUUUGAUUUUAGGUUGUGAUUGGCUCUGCCAAUUUAUUACACUUCUAUUCAAUAUUCAUAGGUUUAUAUCUGUGGCACGGAUUUUGUUUGUCCU .............(((((..(((.....((((...((((.(((((((((.....))))))....)))..)))).))))...((((((((....))))))))...)))....))))).... (-20.66 = -20.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:41 2006