Locus 3445

Sequence ID 3L_DroMel_CAF1
Location 10,106,146 – 10,106,244
Length 98
Max. P 0.768443
window5377

overview

Window 7

Location 10,106,146 – 10,106,244
Length 98
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 76.05
Mean single sequence MFE -25.49
Consensus MFE -13.02
Energy contribution -12.62
Covariance contribution -0.40
Combinations/Pair 1.27
Mean z-score -1.91
Structure conservation index 0.51
SVM decision value 0.52
SVM RNA-class probability 0.768443
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10106146 98 + 23771897
AAAGAAAGGAAGGAAGCUUUUUCAA-AACGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCACCCGAGACGCUC--CAAGGCGGAAAAGCGA----GCAUUUUCCG----------G
.......((((((..(((((((...-..(((((((((.......)))))....((((((.........))))--)).)))))))))))..----...)))))).----------. ( -27.00)
>DroPse_CAF1 49685 112 + 1
AA---AAGGAAGGAAGCUUUUCCAAAAAUGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCACCCGAGACACGCCGCAAAAUGGGAAGGCGCUUCCACAGCUUCCAAAACGCGAACG
..---......(((((((.((((((((((((............)))))))...))))).....(.((..((((............))))..)))..)))))))............ ( -26.10)
>DroSim_CAF1 46049 98 + 1
AAAGAAAGGAAGGAAGCUUUUUCAA-AACGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCACCCGAGACGCUC--CAAGGCGGAAAAGCGA----GCAUUUUCCG----------G
.......((((((..(((((((...-..(((((((((.......)))))....((((((.........))))--)).)))))))))))..----...)))))).----------. ( -27.00)
>DroEre_CAF1 49845 98 + 1
AAAGAAAGGAAGGAAGCUUUUUCAA-AACGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCACCCGAGACGCUC--CGUGGCGGAAAAGCGA----ACAUUUUCCG----------G
.......((((((..(((((((...-..(((((((((.......)))))...(((((((.........))))--))))))))))))))..----...)))))).----------. ( -27.40)
>DroWil_CAF1 142171 82 + 1
----ACAGGAAGGAAGCUUUUU--A-AAUGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCGCUCGAGACGC------------AAAAGAGA----GCAGUCCCUG----------U
----(((((......(((((..--(-(((((............)))))).....)))))((((.......------------......))----))....))))----------) ( -19.32)
>DroPer_CAF1 50028 112 + 1
AA---AAGGAAGGAAGCUUUUCCAAAAAUGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCACCCGAGACACGCCGCAAAAUGGGAAGGCGCUUCCACAGCUUCCAAAACGCGAACG
..---......(((((((.((((((((((((............)))))))...))))).....(.((..((((............))))..)))..)))))))............ ( -26.10)
>consensus
AA__AAAGGAAGGAAGCUUUUUCAA_AACGCCAAAUGAUAAAUGCAUUUUUAAUGGAGCACCCGAGACGCUC__CAAGGCGGAAAAGCGA____ACAGUUUCCG__________G
.......(((((...((((((((.........(((((.......)))))....(((.....)))................))))))))(......)..)))))............ (-13.02 = -12.62 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:14 2006