Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,104,220 – 10,104,318 |
Length | 98 |
Max. P | 0.535885 |
Location | 10,104,220 – 10,104,318 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 87.49 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -24.70 |
Energy contribution | -26.73 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.18 |
Mean z-score | -3.30 |
Structure conservation index | 0.70 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10104220 98 + 23771897 CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCAAAGUGGUAAAGCAACGAGACUUUUAGCAUUUUUGGCCUACAUU ..((((((.(((((((((....)))-----)....))).)).)))))).....((((((((((((.(((((.........))))).)).)))))))))).... ( -31.50) >DroSec_CAF1 43279 98 + 1 CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCGAAAGUGCUAAAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU ..((((((.(((((((((....)))-----)....))).)).))))))......((.(((((((((((((((......)).))))))))))))).))...... ( -37.00) >DroSim_CAF1 44159 98 + 1 CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCAAAGUGCUAAAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU ..((((((.(((((((((....)))-----)....))).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... ( -39.30) >DroEre_CAF1 47883 97 + 1 CUUUUUAUGCCCC-GAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCGAAGUGCUAAGGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU ..((((((.((((-((((....)))-----).....)).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... ( -36.70) >DroYak_CAF1 45847 98 + 1 CUUUUUAUGCCCCUGAGCCACGGCU-----CUAAAAGGUGGGAUAGAGUUUAUUGGGCCGAAGUGCUAGAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU ..((((((.(((((((((....)))-----)....))).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... ( -39.10) >DroAna_CAF1 41919 98 + 1 GGUUUUACGCCCCG-A----GGGCUAUAACCUGAAAGGUGGGACUUGGUUUAUUGGUAGCGAGUGCUUCAGUAGCCAGGCUUUUAGCAUUUUUGGCCUAUAUU ((((.((.((((..-.----)))))).))))....((((.(((.((((((.(((((.(((....))))))))))))))((.....))...))).))))..... ( -28.50) >consensus CUUUUUAUGCCCCUGAGCCACGGCU_____CUAAAAGGUGGGAUAGAGUUUAUUGGGCCAAAGUGCUAAAGCAACGAGGCUUUUAGCAUUUUUGGCCUACAUU ..((((((.(((((.(((....)))..........))).)).)))))).....(((((((((((((((((((......)).))))))).)))))))))).... (-24.70 = -26.73 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006