Locus 3441

Sequence ID 3L_DroMel_CAF1
Location 10,095,983 – 10,096,080
Length 97
Max. P 0.557169
window5373

overview

Window 3

Location 10,095,983 – 10,096,080
Length 97
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -38.53
Consensus MFE -27.69
Energy contribution -28.79
Covariance contribution 1.10
Combinations/Pair 1.09
Mean z-score -1.36
Structure conservation index 0.72
SVM decision value 0.05
SVM RNA-class probability 0.557169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10095983 97 - 23771897
UGCGGCCAUGUUAUCGCCGGCU-GGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGCUGGGCCAGAA---CGGC
..((((((.(((..((((((((-(((((..(((....)))..)))))))......((....))..)))))).....))).)))))).(((....---.))) ( -41.90)
>DroPse_CAF1 39003 80 - 1
--UGGCCAUAAUAUCCCCGGCUCGGGCGUGUUGUUUAUAAUGUGGACU-----------------CUGCUGUGGCCUAC--AGCUGGGCCUGGGCCUCGGC
--.(((((((((((.((((...)))).)))))((((((...)))))).-----------------.....))))))...--.(((((((....))).)))) ( -29.80)
>DroSec_CAF1 34976 97 - 1
UGCGGCCAUGUUAUCGCCGGCU-GGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGUUGGGCCAAAA---CGGC
.(((((((......((((((((-(((((..(((....)))..)))))))......((....))..)))))))))))(((((....)))))....---..)) ( -40.70)
>DroSim_CAF1 35798 97 - 1
UGCGGCCAUGUUAUCGCCGGCU-GGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGUUGGGCCAGAA---CGGC
.(((((((......((((((((-(((((..(((....)))..)))))))......((....))..)))))))))))(((((....)))))....---..)) ( -40.70)
>DroEre_CAF1 39493 97 - 1
UGCGGCCAUGUUAUCGCCGGCU-GGCCGUGUUGUUUAUAAUGUGGCCAGGAAGGAGCAGAAGGACCCGGCGUGGUCGGCCUGGUUGGGCCAGAA---CGGC
.(((((((......((((((((-(((((..(((....)))..)))))))(......)........)))))))))))(((((....)))))....---..)) ( -40.50)
>DroYak_CAF1 37013 97 - 1
UGCGGCCAUGUUAUCGCCGGCU-GGCCGUGUUGUUUAUAAUGUGGCCAGGAAGGACCAGAAGGACCAGAAGGACCCGGCUUGGUUGGGCCAGAA---CGGC
...((((........(((((((-(((((..(((....)))..)))))))...((.((....)).))........))))).......))))....---.... ( -37.56)
>consensus
UGCGGCCAUGUUAUCGCCGGCU_GGCCGUGUUGUUUAUAAUGUGGCCAGAAAGGACCAGAAGGACCCGGCGUGGUCGGCUUGGUUGGGCCAGAA___CGGC
...((((........(((((((.(((((..(((....)))..))))).....((.((....)).))......))))))).......))))........... (-27.69 = -28.79 +   1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:10 2006