Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 997,435 – 997,526 |
Length | 91 |
Max. P | 0.871601 |
Location | 997,435 – 997,526 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -11.93 |
Energy contribution | -12.68 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.14 |
Mean z-score | -3.29 |
Structure conservation index | 0.46 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 997435 91 + 23771897 -----------AAAUAUAUACACAUAAAUGCGAAACACAUUUGUGUGAAAAUAAAU---GUGUG----UACCCAUAGAUAGCCGCAAACUG---GCUGUG-UUUCUGGGGUAC -----------.........((((((((((.......)))))))))).........---....(----(((((.((((((((((.....))---))))..-..)))))))))) ( -27.90) >DroSec_CAF1 15699 89 + 1 -----------AAAUA--UACACAUAAAUGCGAAACACACUUGUGGGAAAAUAAAU---GUGUG----UACCCAUAGAUAGCCGCAAACUG---GCUGUG-UUUCUGGGGUAC -----------...((--(((((((..........(((....))).........))---)))))----))((((.(.(((((((.....))---))))).-)...)))).... ( -25.61) >DroSim_CAF1 15881 89 + 1 -----------AAAUA--UACACAUAAAUGCGAAACACAUUUGUGUGAAAAUAAAU---GUGUG----UACCCAUAGAUAGCCGCAAACUG---GCUGUG-UUUCUGGGGUAC -----------.....--..((((((((((.......)))))))))).........---....(----(((((.((((((((((.....))---))))..-..)))))))))) ( -27.90) >DroEre_CAF1 15126 90 + 1 -----------AAAUA--UAUACAUAAAUACAAAACACAUUUGUGUGAAAAUAAAU---GUGUG----UACUCAUAGAUAGCCGCAAACUG---GCUGUGUUUUCUGGGCUAC -----------.....--................((((((((((......))))))---))))(----((((((.(.(((((((.....))---))))).)....)))).))) ( -21.60) >DroYak_CAF1 16141 94 + 1 -----------AAAUA--UACACAUAAAUAGGAAACACAUUUGUGUGAAAAUAAAU---GUGUGUAUGUACUCAUAGAUAGCCGCAAACUG---GCUGUGGUUUCUGGGGUAC -----------....(--(((((.......(....)((((((((......))))))---))))))))((((((.((((.(((((((.....---..))))))))))))))))) ( -31.40) >DroAna_CAF1 20312 98 + 1 AAGAAUGAACCAAAUA--UAUACAUA-------UUCUCAUUUUUGUGUAAAUAAGUGGUGUGUG----UACUUAUAGAUAGCCGCAUUCUGCCGGCUCUG--CUCGGAGGUAC ........((((..((--(.((((((-------..........)))))).)))..))))....(----(((((..((..((((((.....).)))))...--))...)))))) ( -22.90) >consensus ___________AAAUA__UACACAUAAAUGCGAAACACAUUUGUGUGAAAAUAAAU___GUGUG____UACCCAUAGAUAGCCGCAAACUG___GCUGUG_UUUCUGGGGUAC ....................(((((((((.........))))))))).....................(((((.((((..((.((.........)).))....))))))))). (-11.93 = -12.68 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006