Locus 344

Sequence ID 3L_DroMel_CAF1
Location 997,435 – 997,526
Length 91
Max. P 0.871601
window510

overview

Window 0

Location 997,435 – 997,526
Length 91
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 81.15
Mean single sequence MFE -26.22
Consensus MFE -11.93
Energy contribution -12.68
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -3.29
Structure conservation index 0.46
SVM decision value 0.87
SVM RNA-class probability 0.871601
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 997435 91 + 23771897
-----------AAAUAUAUACACAUAAAUGCGAAACACAUUUGUGUGAAAAUAAAU---GUGUG----UACCCAUAGAUAGCCGCAAACUG---GCUGUG-UUUCUGGGGUAC
-----------.........((((((((((.......)))))))))).........---....(----(((((.((((((((((.....))---))))..-..)))))))))) ( -27.90)
>DroSec_CAF1 15699 89 + 1
-----------AAAUA--UACACAUAAAUGCGAAACACACUUGUGGGAAAAUAAAU---GUGUG----UACCCAUAGAUAGCCGCAAACUG---GCUGUG-UUUCUGGGGUAC
-----------...((--(((((((..........(((....))).........))---)))))----))((((.(.(((((((.....))---))))).-)...)))).... ( -25.61)
>DroSim_CAF1 15881 89 + 1
-----------AAAUA--UACACAUAAAUGCGAAACACAUUUGUGUGAAAAUAAAU---GUGUG----UACCCAUAGAUAGCCGCAAACUG---GCUGUG-UUUCUGGGGUAC
-----------.....--..((((((((((.......)))))))))).........---....(----(((((.((((((((((.....))---))))..-..)))))))))) ( -27.90)
>DroEre_CAF1 15126 90 + 1
-----------AAAUA--UAUACAUAAAUACAAAACACAUUUGUGUGAAAAUAAAU---GUGUG----UACUCAUAGAUAGCCGCAAACUG---GCUGUGUUUUCUGGGCUAC
-----------.....--................((((((((((......))))))---))))(----((((((.(.(((((((.....))---))))).)....)))).))) ( -21.60)
>DroYak_CAF1 16141 94 + 1
-----------AAAUA--UACACAUAAAUAGGAAACACAUUUGUGUGAAAAUAAAU---GUGUGUAUGUACUCAUAGAUAGCCGCAAACUG---GCUGUGGUUUCUGGGGUAC
-----------....(--(((((.......(....)((((((((......))))))---))))))))((((((.((((.(((((((.....---..))))))))))))))))) ( -31.40)
>DroAna_CAF1 20312 98 + 1
AAGAAUGAACCAAAUA--UAUACAUA-------UUCUCAUUUUUGUGUAAAUAAGUGGUGUGUG----UACUUAUAGAUAGCCGCAUUCUGCCGGCUCUG--CUCGGAGGUAC
........((((..((--(.((((((-------..........)))))).)))..))))....(----(((((..((..((((((.....).)))))...--))...)))))) ( -22.90)
>consensus
___________AAAUA__UACACAUAAAUGCGAAACACAUUUGUGUGAAAAUAAAU___GUGUG____UACCCAUAGAUAGCCGCAAACUG___GCUGUG_UUUCUGGGGUAC
....................(((((((((.........))))))))).....................(((((.((((..((.((.........)).))....))))))))). (-11.93 = -12.68 +   0.75) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006