Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,094,438 – 10,094,537 |
Length | 99 |
Max. P | 0.819814 |
Location | 10,094,438 – 10,094,537 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 71.96 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -11.33 |
Energy contribution | -11.87 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.38 |
Mean z-score | -2.01 |
Structure conservation index | 0.40 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10094438 99 - 23771897 ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU-GUGGGGCAACUGGAAUGUGAGAUGAAUAUCCGUUUGGUGCUUGGGAUGGUGGGG-----UGGUGAGAUGUGG ((((((...(((((((((.........)))))-))))((((.(..((.((.((........))))))..)))))........)))))-----)............ ( -29.10) >DroSec_CAF1 33435 91 - 1 ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU-GUGGGGCAACUGGAAUGUGAGAUGAAUAUCCGUUUGGUGCUUGGGAUGCUGG-------------GAUGUGG ..(((....(((((((((.........)))))-))))((((.((.((..(..(((((......)))))..)..)).)).))))))-------------)...... ( -27.30) >DroSim_CAF1 34245 91 - 1 ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU-GUGGGGCAACUGGAAUGUGAGAUGAAUAUCCGCUUGGUGCUUGGGAUGCUGG-------------GAUGUGG ..(((....(((((((((.........)))))-))))((((.(((((.(((.......))))))((.....))...)).))))))-------------)...... ( -26.50) >DroEre_CAF1 37962 84 - 1 ACCCCGAAACCAUGUGCUGAAUAGUUAAGUAU-GUGGGGCAACUGGAAUGCGAGAUGAAUAUCCGUUUGGUGCUUGGGGUGGUGG-------------------- (((((((..(((((((((.........)))))-)))).(((.(..(...(((.(((....)))))))..))))))))))).....-------------------- ( -28.00) >DroAna_CAF1 32008 80 - 1 ACCAUGAGACCAUGUGCUGAAUUGUUAAGCAU-GUGGGCCAAGUGGAAUGCGAGAUGUGAAACAUUUU------UGGGG-----G-------------UCUGUGG .((((.(((((..(((((.........)))))-(((..((....))..)))((((((.....))))))------....)-----)-------------))))))) ( -22.10) >DroPer_CAF1 38063 95 - 1 ACCAUGAACCCAUGUGCUGAAUUGUUAAGCAUUAAGGGGCAUGCGGCAUGCGGCAUGCG---GCAUGUGGCAUGUGGAGU-------GUGGAGAGUGGAAUGUGG .((((...(((..(((((.........)))))...)))((((((.((((((.(....).---)))))).)))))).....-------.......))))....... ( -36.60) >consensus ACCCCGAAACCAUGUGCUGAAUAGUUAAGCAU_GUGGGGCAACUGGAAUGCGAGAUGAAUAUCCGUUUGGUGCUUGGGAUG_UGG_____________GAUGUGG ..(((((..(((((((((.........))))).))))............((.(((((......))))).))..)))))........................... (-11.33 = -11.87 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:08 2006