| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,092,877 – 10,092,974 |
| Length | 97 |
| Max. P | 0.658493 |
| Location | 10,092,877 – 10,092,974 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -19.83 |
| Energy contribution | -19.73 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10092877 97 - 23771897 ------CUGCCACUUUUUGGCCAUAGGCUGCACAACAUGGCGUAUAAUUAAUUACGUAAUGAGCACGCCUGCCAGACACAAAUCCACCAGCGAAG--AAAGAGAA ------.........((((((...(((((((....(((.(((((........))))).))).))).))))))))))...................--........ ( -21.90) >DroPse_CAF1 35859 82 - 1 ------CUGCCACUUUUUGGCCAUAGGCUGUACGACAUGGCGUAUAAUUAAUUGCGUAAUGAGCACGCCUGCCAGCCGCACACUCGGC----------------- ------...........((((...(((((((....(((.(((((........))))).))).))).))))))))((((......))))----------------- ( -23.10) >DroSim_CAF1 32666 99 - 1 ------CUGCCACUUUUUGGCCAUAGGCUGCACAACAUGGCGUAUAAUUAAUUACGUAAUGAGCACGCCUGCCAGACACAAAUCCACCAGCGAAGAGAAAGAGAA ------.........((((((...(((((((....(((.(((((........))))).))).))).))))))))))............................. ( -21.90) >DroWil_CAF1 119613 90 - 1 GCCGAGUUGCCAUUUUUUGGCCAUAGGC-GUACAACAUGGCGUAUAAUUAAUUACGUAAUGAGC--GCCUGCCAGUCGCACUC----AAGAGAAG--UU------ ...((((.((......(((((...((((-((....(((.(((((........))))).))).))--)))))))))..))))))----........--..------ ( -26.90) >DroAna_CAF1 30595 95 - 1 ------CUGCCACUUUUUGGCCAUAGGCUGCACAACAUGGCGUAUAAUUAAUUACGUAAUGAGCACGCCUGCCAGACACAAGCCCACAACU--AG--AAAGAGAG ------..((.....((((((...(((((((....(((.(((((........))))).))).))).)))))))))).....))........--..--........ ( -22.70) >DroPer_CAF1 36462 82 - 1 ------CUGCCACUUUUUGGCCAUAGGCUGUACGACAUGGCGUAUAAUUAAUUGCGUAAUGAGCACGCCUGCCAGACGCACACUCGGC----------------- ------..(((....((((((...(((((((....(((.(((((........))))).))).))).)))))))))).(......))))----------------- ( -21.50) >consensus ______CUGCCACUUUUUGGCCAUAGGCUGCACAACAUGGCGUAUAAUUAAUUACGUAAUGAGCACGCCUGCCAGACACAAACCCACCAG___AG__AA______ ...............((((((...(((((((....(((.(((((........))))).))).))).))))))))))............................. (-19.83 = -19.73 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:05 2006