Locus 3436

Sequence ID 3L_DroMel_CAF1
Location 10,083,159 – 10,083,267
Length 108
Max. P 0.520780
window5367

overview

Window 7

Location 10,083,159 – 10,083,267
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -29.40
Consensus MFE -23.88
Energy contribution -23.56
Covariance contribution -0.32
Combinations/Pair 1.22
Mean z-score -1.33
Structure conservation index 0.81
SVM decision value -0.03
SVM RNA-class probability 0.520780
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10083159 108 + 23771897
CGCAGUUUAUAUAAGCUGAAGGGUCUUUAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUAGGAGCCCUUAUGAAUAGAGUCCCAUUGAU
..((((((....))))))..(((.((((((((.((.(((..(((...(((....((((((.....)))))).))).)))...))).)).)).)))))).)))...... ( -24.70)
>DroSec_CAF1 22394 108 + 1
UGCAGUUUAUAUGAGCUGAAGGGUCUUUAUAACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGGAAAACGUGUUGGGAGCCCUUAUGAAAGGAGUCCCAUUGAU
..((((((....))))))...(..(...........)..).....((((((((..((((((((.((......)).)))))))).((((....))))..)))))))).. ( -26.20)
>DroSim_CAF1 22787 108 + 1
UGCAGUUUAUAUGAGCUGAAGGGUCUUUAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUGGGAGCCCUUAUGAAUGGAGUCCCAUUGAU
..((((((....))))))(((((.((((..(((.....((((.....))))...((((((.....))))))..)))...)))))))))((.(((((....))))).)) ( -28.10)
>DroEre_CAF1 23062 108 + 1
UGCAGUUUAUAUGGGCUGAAGGGCCUUUAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCUAUUUGGAAAAACCUGCUGGGAGCCUUGAUGAAUGGAGGCCCAUUGAU
..((((((....))))))..(((((((((((((((.((((...((((..((...((((((.....)))))).))))))..)).))))).)).))))))))))...... ( -36.90)
>DroYak_CAF1 24061 108 + 1
UACAGUUUAUAUGAGCUGAAGGGCCUUUAUCACAACGCUCGUGGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUAGACGCCUUGAUGAAUGGAGUUCCAUUGAU
..((((((....)))))).(((((.((((.(((....(((((.....)))))..((((((.....))))))..))).)))).))))).((.(((((....))))).)) ( -31.10)
>consensus
UGCAGUUUAUAUGAGCUGAAGGGUCUUUAUCACAACGGUCAUAGGUAAUGGGAAUUUUCCGAUUUGGAAAAACGUGUUGGGAGCCCUUAUGAAUGGAGUCCCAUUGAU
..((((((....))))))((((((.((((.(((.....((((.....))))...((((((.....))))))..))).)))).))))))((.(((((....))))).)) (-23.88 = -23.56 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:05 2006